Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1078 ATAACAACAACAACCCTGGCTAATCCTTGGTGGAGTGGCCATCAGGTGGGGTTGGGTGTAGGGATTGACCCTACACCTTCTTCCCTAAACAAACACCAAATAGACCTTTCCATAAACGAAAACAACGAAAATAGAGAAGAGGAAGAAGAAGAAGAGAGAGAGAACAGCGATGAACCGAAAGAGGGTGCAGTTGAGGTTGGAACGCGAAGACCAAGAGGGAGACCCCCAGGATCCAAAAACAAGCCCAAACCCCCAATCTTTGTCACAAGGGACAGCCCAAACGCGCTTAGGAGCCACGTAATGGAGGTAGCTGGTGGAGCTGACGTGGCAGAAAGCATGGCCCACTTCGCAAGGAGGCGCCAGCGTGGCGTCTGCGTCCTTAGTGGGAGTGGCTCTGTCGCCAACGTTACTCTCCGACAACCTACGGCACCTGGAGCTGTTGTAGCACTCCATGGAAGGTTCGAGATTCTGTCCTTAACTGGGGCGTTTCTTCCAGGACCTGCTCCTCCAGGGGCCACTGGACTCACTGTGTACCTTGCTGGAGGACAGGGTCAGGTTGTGGGAGGGAGTGTTGTTGGCCCTCTGGTGGCTGCTGGCCCTGTTATGGTTATTGCTGCTACTTTTTCTAATGCTACTTATGAGAGGTTGCCTCTTGAGGAGGATGAAGAGGATGAGGGTGGTGGTGGTGGCGGGGGCGGCGGTAACATTCATGGTGGAGGAAGTGCTTTGGGAGGGTCTCCTTCTAGAATTGGAAGCAGTGCTGCTGGGACCCATTTACAGCCTGGGATTCCTGATCCTTCTTCTTTGCCCTTGTATAATCTCCCACCAAATCTTCTTCCCAATGGAGGCCAAGTGGGCCATGAAGCTTTTGCTTGGCCTCATGCTCATGCAAGACCACCTTACTGA 906 0.5309 ITTTTLANPWWSGHQVGLGVGIDPTPSSLNKHQIDLSINENNENREEEEEEERENSDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGADVAESMAHFARRRQRGVCVLSGSGSVANVTLRQPTAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGPLVAAGPVMVIAATFSNATYERLPLEEDEEDEGGGGGGGGGNIHGGGSALGGSPSRIGSSAAGTHLQPGIPDPSSLPLYNLPPNLLPNGGQVGHEAFAWPHAHARPPY* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1078 301 Gene3D - 96 224 - -
Apr8g1078 301 PIRSF ESCAROLA 20 301 IPR014476 GO:0003680
Apr8g1078 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 210 IPR005175 -
Apr8g1078 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 222 - -
Apr8g1078 301 MobiDBLite consensus disorder prediction 27 94 - -
Apr8g1078 301 CDD DUF296 97 180 IPR005175 -
Apr8g1078 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 301 IPR014476 GO:0003680
Apr8g1078 301 MobiDBLite consensus disorder prediction 219 268 - -
Apr8g1078 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 21 301 - -
Apr8g1078 301 MobiDBLite consensus disorder prediction 42 56 - -
Apr8g1078 301 Coils Coil 31 58 - -
Apr8g1078 301 ProSiteProfiles PPC domain profile profile. 93 229 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1078 Apr-Chr8 14228183 14229088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1078 6 301 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 62.706 3.09e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1078 - - mesc:110601522 327.405