Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1073 ATGGCGGAAGAACATTCCGTAGCAGCATCAGAAGAAGAAACAACATTCCAGAATCTTCCCTCCCCATTGAAAAACAACAATGTCGTTTTCGTAAACGGCAACCCCGTCCTCGTGGCCCAGCCCCTCACGGTGGTCCGCGCCCTCACCAGCACCGGCGGTGCGCGCGTTCTGGCGGCGCCGCTGAACCCTAACGCGACCATAACCAAAGTGAAGGAAGAGCCCCAAGAAAAAGAAGAACAAGGAGAAACTGGCTTCAACGTTTCTCAACCTAGGCTTTCGTTCGACAAGTTTCTCAAGGCGACAAAGACGAAAGTCGCGTCCGAAGACGACGCTATGAAATCAATGGCGTCACTCAAAGGAGAAAAAGAATCAACGATTCGAACGGTGCCGGAAATTGTTAAAGTGAAGAAGGAGGTTGTTTTGGATGAAATGGAGGCTAGTAAACCCTTCGAGGAACTGAACTTCATGAACAAACCGGTTGTTGAAGAGAGGAAGATTCCGAATCTTGAGGATGGCGAGTTTCCTGAAGAACCTGGTTGGTTATTGATGGGAAGGAAGGTTGAGGTTGCGATTTCGACCGCGAGAGGAGCAAGGAAGTTGGTGGACAATGAAATCGTTCACTTCAATTTTCCTCTGCCCACGTACTCTATCAAGTCTCGGTTGATTGTTCGCATCTCAACAAAGCGTTCGGGAGAGGTTGGGAGGCTGCCGATGGAATGGGCGAAAACTGTGATTCCACTTGTGCAATCCGGAAAGGTTAGGGTTCGAGGCCGATGCATCGCAGCGCCGGACAAACTGCAGATGATGCAGGAGATTATGTTGTTAGTGAGCTTTTATATTCATCACTCTGTGTTTTCTGAGCGTGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACAATTTATCCAATCCTTACACTGTTTAAAATGCTAGATATTAAGCCATCTCAAAAGGCTGAATTCACCCCTGAGGATATAGATTCTCGGAAGCGGCTGCTCTATCCAAAGGTTGAGTCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAGGGCGGTGAACAGCTTCCGGAGCAAAATGACGATGAACCAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAACTGCAGAAATATATGACTTGGAGGAGAAAGAAGCCCCATGGGCACTAACGTGTAATCTAAAGCCTTACCAGAAGCAAGCTCTGTATTGGATGTCAGAAATTGAGAAGGGAATGGATGTGGAGATTGCTGAGAGGAATCTGCATCCGTGCTGGTCAGCCTACAGTATATGCAATGGAAGGACAATTTATGTGAACATTTTCACGGGGGAAGCAACAAAGAAGTTTCCAAAAGCAACACAGATGGCAAGAGGAGGAATTCTAGCGGATGCTATGGGACTTGGAAAGACTGTTATGACTATTGCTTTGATTCTCAGTAACCCAGGCTGGGGCAACTCAGAAAAAAGGGATGCAGAGAATGATAATATTATAACAAATAAGAGAAAGAATGCTAATTCCTTGTATAAAGTTAAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAGTGGAAGGATGAGCTAGAAACGCATTCAAAATCAGGTAGTATATCTATATTTGTTCATTATGGTGGCGGTAGAACCAATGATCCCGAGTTGATCTCAGAGCATGATGTTGTCTTAACAACCTACGGTGTCCTATCAGCTTCATACAAAAGTGATGGAGACAATAGCATCTACCACAGGGTCCAGTGGTACAGGGTGGTGCTAGACGAAGCTCATAATATAAAAGCCCATAGAAGCCAGACTGCCCAGGCTACTTTTACTTTGTCCTCACATAGCCGTTGGTGTCTAACTGGAACCCCGCTTCAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCATAAGTTGGTTCAAAGGCCTTATGAGAATGGTGATCCGAGAGCCCTGAAGTTGGTCAAGGCCATTTTGAGGACATTGATGTTAAGAAGAACGAAGGAAACTAAGGACAAGGAAGTAAGGCCTATACTTTTTCTGCCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCCGAAAGGGACTTCTATGATGCCCTTTTCGCCGGATCTAAAGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTCACCATTATGCCAATATCCTTGACCTGCTAATGCAGTTGAGACGGTGTTGTAACCATCCATTTTTGGTTATGTGTGGAAGTGATTCCCAGAAATATGCAAACTTAAGCAGACTCGCAAGAAGATTCCTTCAATCAAATTCTGATTCTGCTGCTCATTCTATCCAATCTCGTGCATACATTGATGAGGTTTTGGAGCATATTCAAAAGGGTGAAACTGTAGAATGCTCTATCTGTATGGAATCTCCTGATGATCCTGTCTTTACACCATGTGCCCATAGATTTTGTAGAGAATGTCTATTTAATTGCTGGGGTACCTCAGCGGGTGGTAAATGTCCAATCTGTCGTCAACCGCTCCAGAAAACTGATCTGATCACTTGTCCTTCCGAAAGTCCATTCAAGGTTGATATTAAGAACAATTTGACAGAATCTTCGAAGGTTTCAAAGCTATTGAATTTCTTGCAACAGATTCAGAGGTCATCCTCAGGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCGTTTTTCGATCTGTTGGAGAACCCATTGAGGAGGACAGGAATTGGATATTTAAGATTTGATGGTAAACTGTCTCAGAAACAGAGGGAGAAAGTTCTGGATGAATTTAACGAGACAAGAGAGAAAAGGGTTTTGTTGATGTCACTAAGGGCTGGTGGTGTGGGTTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAGGCAATAATGAGAATTCATCGTATAGGACAAAAGCGACGAGTAATTGTTAGAAGATTCATTGTGGAGGGCACAGTGGAAGATCGATTGCAGCAAGTGCAAGCGAGGAAACAGAGGATGATATCCGGTGCCCTCACCGATGATGAGGTTCGGACTGCTAGGATTCAAGACCTCAAAATGCTTTTCTCATGA 3168 0.4444 MAEEHSVAASEEETTFQNLPSPLKNNNVVFVNGNPVLVAQPLTVVRALTSTGGARVLAAPLNPNATITKVKEEPQEKEEQGETGFNVSQPRLSFDKFLKATKTKVASEDDAMKSMASLKGEKESTIRTVPEIVKVKKEVVLDEMEASKPFEELNFMNKPVVEERKIPNLEDGEFPEEPGWLLMGRKVEVAISTARGARKLVDNEIVHFNFPLPTYSIKSRLIVRISTKRSGEVGRLPMEWAKTVIPLVQSGKVRVRGRCIAAPDKLQMMQEIMLLVSFYIHHSVFSERVDTSWRLEACGKIDDTIYPILTLFKMLDIKPSQKAEFTPEDIDSRKRLLYPKVESDEAAALPLIKRRKGGEQLPEQNDDEPALSESALNKLVGTAEIYDLEEKEAPWALTCNLKPYQKQALYWMSEIEKGMDVEIAERNLHPCWSAYSICNGRTIYVNIFTGEATKKFPKATQMARGGILADAMGLGKTVMTIALILSNPGWGNSEKRDAENDNIITNKRKNANSLYKVKGGTLIVCPMALLGQWKDELETHSKSGSISIFVHYGGGRTNDPELISEHDVVLTTYGVLSASYKSDGDNSIYHRVQWYRVVLDEAHNIKAHRSQTAQATFTLSSHSRWCLTGTPLQNSLEDLFSLLCFLRVEPWCNWAWWHKLVQRPYENGDPRALKLVKAILRTLMLRRTKETKDKEVRPILFLPPTDIQLIECEQSESERDFYDALFAGSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGSDSQKYANLSRLARRFLQSNSDSAAHSIQSRAYIDEVLEHIQKGETVECSICMESPDDPVFTPCAHRFCRECLFNCWGTSAGGKCPICRQPLQKTDLITCPSESPFKVDIKNNLTESSKVSKLLNFLQQIQRSSSGEKSIVFSQWTSFFDLLENPLRRTGIGYLRFDGKLSQKQREKVLDEFNETREKRVLLMSLRAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVEGTVEDRLQQVQARKQRMISGALTDDEVRTARIQDLKMLFS* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1073 1055 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 326 1054 - -
Apr8g1073 1055 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 867 IPR013083 -
Apr8g1073 1055 ProSitePatterns Zinc finger RING-type signature. 833 842 IPR017907 -
Apr8g1073 1055 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 457 649 IPR014001 -
Apr8g1073 1055 SMART ultradead3 397 668 IPR014001 -
Apr8g1073 1055 PANTHER DNA REPAIR PROTEIN RAD5B 326 1054 - -
Apr8g1073 1055 Pfam SNF2-related domain 404 765 IPR000330 GO:0005524|GO:0140658
Apr8g1073 1055 SMART helicmild6 919 1002 IPR001650 -
Apr8g1073 1055 CDD SF2_C_SNF 874 1013 - -
Apr8g1073 1055 Pfam HIRAN domain 195 274 IPR014905 GO:0003676|GO:0008270|GO:0016818
Apr8g1073 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 687 IPR027417 -
Apr8g1073 1055 CDD DEXDc_SHPRH-like 401 687 - -
Apr8g1073 1055 SMART ring_2 818 857 IPR001841 -
Apr8g1073 1055 Gene3D - 703 1055 IPR027417 -
Apr8g1073 1055 Gene3D - 451 688 IPR038718 -
Apr8g1073 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 1045 IPR027417 -
Apr8g1073 1055 SMART HIRAN_2 183 280 IPR014905 GO:0003676|GO:0008270|GO:0016818
Apr8g1073 1055 Pfam Helicase conserved C-terminal domain 889 1002 IPR001650 -
Apr8g1073 1055 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 888 1055 IPR001650 -
Apr8g1073 1055 SUPERFAMILY RING/U-box 814 868 - -
Apr8g1073 1055 ProSiteProfiles Zinc finger RING-type profile. 818 858 IPR001841 -
Apr8g1073 1055 Pfam Zinc finger, C3HC4 type (RING finger) 816 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1073 Apr-Chr8 14149722 14155282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1073 155 1054 RAD5 or RAD16-like Gene Family AT5G43530 65.419 0.0 1240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr8g1073 SNF2_N 7.7e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1073 K15505 - gmx:100806677 1598.56