Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1069 ATGGATTCCTTAGAAGACAGTGGCTGTTGGGATTTTCTCGATTACTCTTTCATTGATCACACTCCCCCCGCGCCCCCCGATTTCCTTTGGCCCAATCACAGTGTGGGAACGGAAATTGACATTCCAGGTGGTGCTACTTCTTGTCAAGAGAACACCAGGAAGAGGGGACGCACCGATTCATGCTGCAAGGCAGGAACAAAAGCTTGCCGAGAGAAATTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAGAACAGATAAACCAGCTATACTAGATGATGCGATCAGAGTCTTGAGCCAACTTAAAACTGAAGCTCAGGAACTGAAAGAAACAAATGAAAAGTTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTCCGTGAAGAGAAACTTGTTTTGAAAGCAGATAAAGAGAGAATTGAGAAGCAGTTGAAAGCTTTGCCCATTCCACCTGCAGGGTTTATGGCTCCTCCTGTAGCTGCATATCAAGCAGGGGTGAGCAAGATGGCTGTTTATCCAAACTATGGCTATGTCCCAATGTGGCAATATCTTCCCCCATCTGCCAGAGATACATCCCTTGATCATGAGCTCAGGCCTCCTGCTGCATAG 654 0.4587 MDSLEDSGCWDFLDYSFIDHTPPAPPDFLWPNHSVGTEIDIPGGATSCQENTRKRGRTDSCCKAGTKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPIPPAGFMAPPVAAYQAGVSKMAVYPNYGYVPMWQYLPPSARDTSLDHELRPPAA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1069 217 Gene3D - 63 146 IPR036638 GO:0046983
Apr8g1069 217 SMART finulus 68 119 IPR011598 GO:0046983
Apr8g1069 217 PANTHER BHLH TRANSCRIPTION FACTOR 1 217 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Apr8g1069 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 140 IPR036638 GO:0046983
Apr8g1069 217 Coils Coil 103 158 - -
Apr8g1069 217 Pfam Helix-loop-helix DNA-binding domain 66 113 IPR011598 GO:0046983
Apr8g1069 217 CDD bHLH_AtILR3_like 67 142 - -
Apr8g1069 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Apr8g1069 217 PANTHER TRANSCRIPTION FACTOR BHLH104 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1069 Apr-Chr8 14062486 14067304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1069 52 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 70.060 6.89e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g1069 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1069 - - gmx:100787583 371.703