Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1068 ATGGATTTTGTGAGCCAAAGGCATCTACTCCATGTGCCACAAGCACTTTCCCCATATTTTCAACCACCTTATGAGACTGGGAATCCTCCTCATACAAGTACTCCCATCGTAGCAATCCTTATAATAGGAATGACGGTCACATCTTTCTTCCTTCTGGGCTACTACATCTTTGTCATCAAGTGTTGCCTCAATTTGCAGCACCGTGTTGATCACACAAGGCGTTTATCTATAGTTAGGCAAGGTGAATACCCATCATACTCAACAGCATCAGAGCCTAGAGGACTAGAGGAAGCAGTGATTAGGTTGATCCCAGTGATTCATTACACGCCAGAAGAAGGGGTCAGAGAATTCGGTGAGAGAAGCTTTTCTTGTGAGTGTGCAATTTGCTTGAATGAGTTTCAAGAGGATGAGAAGCTCAGGGTTATACCAAATTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGTTCATTGCCCACTTTGTAGAAGAAATGTTTCCTTAACAAGCCATGTTGTCAATGTTGACCAGCTCATAACACCCAGGCCTTCCCCCCAGGACCAAAGCCAAAACATTGAAAGCCTCATTGGTGTTGATGAAGGATTTGTTGTGATTGATTTGGATAGTGAAGATGGTAGAGGCCAAAACTTGGAAGCAAGACAAGAAGAGTTGCCAACACGTTCTATTGGTCTTTCTTCACAAAGCAAGAAAGAAAGGAAGTTTCAAAAAGTAACCAGCATGGGGGATGAGTGTGTCGGTGATAGAGCCAAAGATGAAAGATTCTTAGTTCAACCCATGAGGAGGTCTTTCTCCATGGACTCATCAGTGAATAGACAGTTCTATGGGGCTATACAGCACCAAAATGGGCATGTCCATGAAGTTAGCACCATTGAAACCTGTGTTGGGGGTAGTGGTAGAGTAAAAAGATCATGCTTTTCTTTTGGCCATGGAAGGAGATCAATAAGTGCTGTGCTACCTGTTTATTTGGACCCATGA 1011 0.4303 MDFVSQRHLLHVPQALSPYFQPPYETGNPPHTSTPIVAILIIGMTVTSFFLLGYYIFVIKCCLNLQHRVDHTRRLSIVRQGEYPSYSTASEPRGLEEAVIRLIPVIHYTPEEGVREFGERSFSCECAICLNEFQEDEKLRVIPNCSHVFHIDCIDVWLQNNVHCPLCRRNVSLTSHVVNVDQLITPRPSPQDQSQNIESLIGVDEGFVVIDLDSEDGRGQNLEARQEELPTRSIGLSSQSKKERKFQKVTSMGDECVGDRAKDERFLVQPMRRSFSMDSSVNRQFYGAIQHQNGHVHEVSTIETCVGGSGRVKRSCFSFGHGRRSISAVLPVYLDP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1068 336 SUPERFAMILY RING/U-box 107 175 - -
Apr8g1068 336 SMART ring_2 126 167 IPR001841 -
Apr8g1068 336 PANTHER RING-H2 FINGER PROTEIN ATL16 22 335 - -
Apr8g1068 336 Pfam Ring finger domain 125 168 IPR001841 -
Apr8g1068 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 173 IPR013083 -
Apr8g1068 336 PANTHER RING-H2 FINGER PROTEIN ATL16 22 335 IPR044600 GO:0016567|GO:0016740
Apr8g1068 336 CDD RING-H2_PA-TM-RING 125 168 - -
Apr8g1068 336 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1068 Apr-Chr8 14041456 14042466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1068 32 336 C3H Transcription Factor Family AT1G04360 43.478 2.45e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1068 - - gmx:100812364 402.519