Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1065 ATGGATTGCTCCTCCACCCTCCACTCATCAAACTCTGATTTCTCCACAGAATCATCACTTGGGTCTCCGAATCACTACCTCCCATTCAACGAAAACGACCCGGAAGAGATGCTCCTATATGGCATGATCGCATCACAGCAGCAACAACAACAACAAGAAGGAGTTTATAACACATGCAGGGTGATCAAGGAAGAGGAGGTGAATTCGGAGGAGAAGATGAAAAACACTAAGAAGAAGAAGAGCTACCGAGGCGTCCGGCGGAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACGAGGCACGGCATGAGGGTGTGGCTTGGGACATTTGATAGCGCTGAAGCCGCAGCGTTAGCTTATGATCAAGCCGCGTTTTCCATGAGGGGCTCTAATGCAATTCTCAACTTCCCTGTGGAGAAGGTGAAGGAGTCACTTAGGGACATGAATTGTTGTCTTGAGGGGTGTTCCCCTGTGGTGGCCTTGAAGAGAAGACACTCTTTGGGACGCAAAGTGGCTGCTAAAAAGAAGAAAGAGGACTATGATGTTAGGTTCGACAATGTGGTTGTGTTGGAAGACTTGGGTAAAGAGTATTTGGAACAATTGTTGATGTGCTCTGATGATACTACTAGTAGTTGTTGGTGA 648 0.4861 MDCSSTLHSSNSDFSTESSLGSPNHYLPFNENDPEEMLLYGMIASQQQQQQQEGVYNTCRVIKEEEVNSEEKMKNTKKKKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGSNAILNFPVEKVKESLRDMNCCLEGCSPVVALKRRHSLGRKVAAKKKKEDYDVRFDNVVVLEDLGKEYLEQLLMCSDDTTSSCW* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1065 215 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Apr8g1065 215 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Apr8g1065 215 MobiDBLite consensus disorder prediction 1 26 - -
Apr8g1065 215 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Apr8g1065 215 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Apr8g1065 215 PRINTS Ethylene responsive element binding protein signature 121 141 IPR001471 GO:0003700|GO:0006355
Apr8g1065 215 PANTHER DNA-BINDING DOMAIN 19 206 IPR044808 GO:0003700|GO:0009873
Apr8g1065 215 Gene3D AP2/ERF domain 80 141 IPR036955 GO:0003700|GO:0006355
Apr8g1065 215 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Apr8g1065 215 SUPERFAMILY DNA-binding domain 81 141 IPR016177 GO:0003677
Apr8g1065 215 MobiDBLite consensus disorder prediction 1 28 - -
Apr8g1065 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 19 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1065 Apr-Chr8 13913573 13914220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1065 7 215 AP2-EREBP Transcription Factor Family AT3G23240 55.357 2.35e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g1065 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1065 K14516 - gmx:100780576 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0018 4 200631 201299 Apr8g1065 8 13913573 13914220 PCT