Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1056 ATGGCAGATCTTGATAGTTATGGGAGTAATGAGCGGGATGTTGAGCAAGCATTCCTCTCTTTGAAAAAGGGAACTCAGCTAGTTAAGTATAGTCGGAAAGGGAAGCCAAAATTTTGTTCATTCAGGCTCTCACCAGATGAAACAAAGCTTATTTGGATTTCTCGTGGAAGGGAAAAGAACCTAAACTTGTCTTTTGTTTCACACATTATCCCAGGACAAAGAACAGCAGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCCTTTTCACTTATTTTTAAAAAGGGGGAACGGTCACTTGATCTGATCTGCAAGGACCAAGCTGAGGTAGAGGTATGGTTTTCAGGCCTTAAGGCATTAATTTCCACTGGAGAGCGTAGCAGGCGTGGTAGAAGTAATTTCACCGATGATAGTGTTCACTTTGTTCCAAATGATCGTCCTTCTGCTGGATCACTAGAGTTAGCATCAAGCATTGCCCGTGGCAGGTTTTCTGTTGATTCAGTGCCTCGTGAATCTACATCGTCTTGGCCAAGATCAGATGTGGGGTCTGAACGTGCAAATATGCCACTAAGGACAAGTGTTGGAGAAGGTTCTCGTGTTAGTGTGTCAAGTATTAGCCACTCAAGTAGTGTAGGATCAGGGCTAGATGACATAGAATCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGACGGGAATTCATCTGATGGATTGGGGAGTCAAGTCCCTTCTAAGACAGATGTGCTGAGTCCTAAGCCATTAGAGTCTGATGTTGTTCTTGATGTTCAACAAATTGGGCCTGGTGTACGACACATTGCTTTGGTTACAAGGCAAGGAGAGGTTTTTACCTGGGGAGAGGACTCTGGGGGAAGACTTGGTCATGGGTTTGATAAAGATTTTGGTCAACCTCATCTTGTGGAGTCCTTGGCAGTTACTAATGTGAGTTTTGTTGCATGTGGTGAATATCATACATGCGCTTTATCTATGTCAGGTGATCTATTCACCTGGGGTGATGGTACAAATAATATAGGACTCCTTGGCCATGGCACTGATGTTAGCCATTGTATACCAAAGAGGATTAATGGTCCTTTAGAGGGACTTCAGGTTGTATCTGTAGCATGCGGTGCATTGCATTCAGCATTAGCAACCTCTAATGGAAAACTTTTCACTTTTGGAGATGGAAGATTTGGTGTCTTGGGCCATGGAGATCGAGAGAGTGTGTCATATCCAAAGGAGGTACAGTTATTGAGTGGACAAAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACACAGCAGCCATTTTAGAGGTTATGGATCCGTCTGGTTCAAATGCTTCAAATAGGAGGCTCTTCACATGGGGTGATGGTGACCAATATCGTTTGGGTCATGTAAACAAGGATACTTACCTTCAACCAACTTGTGTAGTAGCACTCGCTGAGTATAATTTTAACCAGGTTGCATGTGGATACACTATGACTGTTGCACTCACTGTATCTGGTCATGTTTTTACTATGGGCAGCACAGCATATGGTCAACTAGGAAATCCAATGTCTGATGGAAAAGTGCCAATTCTGGTGCGGGATAAATTAGTAGGTGAGTTTGTGGAGGAAATATCATGTGGAGCACATCATGTTGCTGTATTGACTTCAAGAAGTGATTTATATACTTGGGGGAAAGGTACCAATGGAAGATTAGGACATGGAGACACAGATGACCAGCAAACTCCAACATTGGTGGAAGCCTTCCGAGACAGGCATGTAAAGAATATCTCGTGTGGATCCAGCTTTACATCTTGTATATGCTTACATAAATGGGTTTCTGGGGCTGACCAATCTTTTTGCTCTGATTGTCGACAACCATTTGGTTTTACTAGAAAAAGGCATAATTGCTATAATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCATTGAAAGCAGCATTGGCTCCTACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTTCTGATAATGCTTCGAATTTTAATAGAGAAATTAGTCATCCCTCTAGTTCCATATATGGAAGGGAAAAATTTGACCGGGGAGAGGTAAGGTCTTCAAGAATTCTCTTGCCTCCCACCACAGAACCGGTAAAATACCTTGAGATAAGGACCAATAAACCTGGAAGTATACATGACACTTCTTCCATAGTTCGAGCTGCTCAAGTTCCTACACGTTTACAATTGAAAGATGTTGCATTTCCAAGTTCATTGAGTTCCGCGCAGAATATTTACAAGTCCGTTATACAGCCAATTCAACCTCCAACTTCACCTGCCACAGCTACTTCTTCAAGACCTATGTCACCATATGCTAAAAGACCACCCAGCCCACCACGTTGTTCCTCCCCAGGATTTTCAAGAAGCCTTATTGATAGTTTAAGGAAGAAAAATGATCTTTTGAATCAAGAAGTCTCAAAATTGCAAAACCATATTCGAAGCATAAAACAAAAGGGTGACATGCAAGATATGAAGATTCAGGAGCTTCACAAAAATGTTGAGAAAACCACGTCACTGGCTGGAGAGGAATCATCTAAGCTTAGAGAAGCAAAGGAATTTATTAAGTCCATGACAGATAAGTTGAGGGAAGTGACTGAGAAGTTGCCACCAGAGATTGCTGAAAATGAAACCTTGATATCGATGCGGGCTCAAGCAGAAGAATTTCTTAATGAAAAGACTGATATTGAATCTTCTTCCTCCTCGCCGAGCCTCGAGTCTGAGCAACAAAGTGCAACTGATATACCTGCCTCTGATAGTGACTCTTCAAAACTGAAAGAGCAAGGACTGGAAGCAAATGATGATGCTTCAGGGATTGTTCCATCTACATATGGAGGAAATATTCTTGAAGAAAGCAACAATGAATCGATGCCTAATAATGCATCTGTGTCTAGTACAGGAGTGCCTCCAACGAGATCAGAAAATAGTTCAAGATCAAATGATTCTCGTATACCTGCGAGAGATGGAGAAAGATCAGTCATTGAACAATTTGACACTGGTGTTTATATCACACTTATAGTACAACCTAATGGTAGCAAAGTTTTCAAACGAATTAGATTCAGTAAGCGAAGATTCAATGAACAACAGGCAGCAGAATGGTGGAGCAAAAACAAAGATAGGGTGTTTAGTAGATACATTCCAGCAGCCACACAGAATGCAAGTACTGAGTCATCCATTACCCCTCCTGCTGAAGATAATGTTGAAGCATTACCTTCTTAA 3273 0.418 MADLDSYGSNERDVEQAFLSLKKGTQLVKYSRKGKPKFCSFRLSPDETKLIWISRGREKNLNLSFVSHIIPGQRTAVFRRYLRPEKDYLSFSLIFKKGERSLDLICKDQAEVEVWFSGLKALISTGERSRRGRSNFTDDSVHFVPNDRPSAGSLELASSIARGRFSVDSVPRESTSSWPRSDVGSERANMPLRTSVGEGSRVSVSSISHSSSVGSGLDDIESLGDVYIWGEVWADGNSSDGLGSQVPSKTDVLSPKPLESDVVLDVQQIGPGVRHIALVTRQGEVFTWGEDSGGRLGHGFDKDFGQPHLVESLAVTNVSFVACGEYHTCALSMSGDLFTWGDGTNNIGLLGHGTDVSHCIPKRINGPLEGLQVVSVACGALHSALATSNGKLFTFGDGRFGVLGHGDRESVSYPKEVQLLSGQKAIKVACGVWHTAAILEVMDPSGSNASNRRLFTWGDGDQYRLGHVNKDTYLQPTCVVALAEYNFNQVACGYTMTVALTVSGHVFTMGSTAYGQLGNPMSDGKVPILVRDKLVGEFVEEISCGAHHVAVLTSRSDLYTWGKGTNGRLGHGDTDDQQTPTLVEAFRDRHVKNISCGSSFTSCICLHKWVSGADQSFCSDCRQPFGFTRKRHNCYNCGLVYCHPCSSKKALKAALAPTPSKPHRVCDACYAKLKGSDNASNFNREISHPSSSIYGREKFDRGEVRSSRILLPPTTEPVKYLEIRTNKPGSIHDTSSIVRAAQVPTRLQLKDVAFPSSLSSAQNIYKSVIQPIQPPTSPATATSSRPMSPYAKRPPSPPRCSSPGFSRSLIDSLRKKNDLLNQEVSKLQNHIRSIKQKGDMQDMKIQELHKNVEKTTSLAGEESSKLREAKEFIKSMTDKLREVTEKLPPEIAENETLISMRAQAEEFLNEKTDIESSSSSPSLESEQQSATDIPASDSDSSKLKEQGLEANDDASGIVPSTYGGNILEESNNESMPNNASVSSTGVPPTRSENSSRSNDSRIPARDGERSVIEQFDTGVYITLIVQPNGSKVFKRIRFSKRRFNEQQAAEWWSKNKDRVFSRYIPAATQNASTESSITPPAEDNVEALPS* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1056 1090 MobiDBLite consensus disorder prediction 913 937 - -
Apr8g1056 1090 Gene3D - 187 444 IPR009091 -
Apr8g1056 1090 Pfam Transcription factor regulating root and shoot growth via Pin3 1009 1063 IPR013591 -
Apr8g1056 1090 MobiDBLite consensus disorder prediction 910 1009 - -
Apr8g1056 1090 MobiDBLite consensus disorder prediction 1068 1090 - -
Apr8g1056 1090 Pfam FYVE zinc finger 608 673 IPR000306 GO:0046872
Apr8g1056 1090 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Apr8g1056 1090 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Apr8g1056 1090 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Apr8g1056 1090 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Apr8g1056 1090 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Apr8g1056 1090 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Apr8g1056 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Apr8g1056 1090 SUPERFAMILY RCC1/BLIP-II 224 609 IPR009091 -
Apr8g1056 1090 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Apr8g1056 1090 ProSiteProfiles BRX domain profile. 1009 1064 IPR013591 -
Apr8g1056 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1071 - -
Apr8g1056 1090 MobiDBLite consensus disorder prediction 964 998 - -
Apr8g1056 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 684 IPR013083 -
Apr8g1056 1090 CDD PH_PLC_plant-like 12 124 - -
Apr8g1056 1090 SUPERFAMILY PH domain-like 13 123 - -
Apr8g1056 1090 CDD FYVE_like_SF 618 670 - -
Apr8g1056 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Apr8g1056 1090 Pfam Transcription factor BRX N-terminal domain 861 896 IPR027988 -
Apr8g1056 1090 MobiDBLite consensus disorder prediction 769 807 - -
Apr8g1056 1090 SUPERFAMILY FYVE/PHD zinc finger 608 678 IPR011011 -
Apr8g1056 1090 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1071 - -
Apr8g1056 1090 MobiDBLite consensus disorder prediction 170 197 - -
Apr8g1056 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Apr8g1056 1090 Coils Coil 866 886 - -
Apr8g1056 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Apr8g1056 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Apr8g1056 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Apr8g1056 1090 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Apr8g1056 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Apr8g1056 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Apr8g1056 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Apr8g1056 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Apr8g1056 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 334 385 IPR000408 -
Apr8g1056 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 453 500 IPR000408 -
Apr8g1056 1090 Gene3D - 13 131 IPR011993 -
Apr8g1056 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Apr8g1056 1090 SMART fyve_4 606 675 IPR000306 GO:0046872
Apr8g1056 1090 Coils Coil 810 837 - -
Apr8g1056 1090 MobiDBLite consensus disorder prediction 769 789 - -
Apr8g1056 1090 Gene3D - 445 612 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1056 Apr-Chr8 13699074 13705327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1056 925 1064 Major Intrinsic Protein MIP AT1G31880 32.639 2.05e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1056 - - gmx:100778984 1707.58