Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1032 ATGGGGAAAACAAGCAAGTGGCTTAAAAACTTGTTGACAGGGAAGAAAGACAAGGAAAAGGAGAAGGAAAAATGTGCTACCAACCTGTGTTTGTCAAATGGCTCAGAAAATCCAACCACTCCAATTTCAACAATCCCAAAGGAGAAAAGAAGATGGAGTTTCCGGCGATCATCAGCTTCCAAGGAAATGAATCTCGCAGAATCAAGTGTCACTACTTCAATATTGCATACTAACGCAGATGCTGAGAATGATCAAAGGAAACAAGCCGTGATGGCGATGGCCGTGGGCGTGGCTATTGCCTCAGCAGTTTCACCTGATGCCATGATCTGCTTGACTCCTTGTTCCAATGAAACAACAAGTATTGAAGAGGCTGCAGCCATTAAAATTCAATCGGTTTTTCGGTCCTATTTGGCAAGAAAGGCATTGTGTGCTCTTAGAGGATTAGTGAAGTTGCAGGCACTAGTAAGAGGTCACTTGGTGAGAAAACAAGCTAGGGAGACTCTAAGATGCATGCAAGCTTTGGTCATAGCACAAGCCAGGGCTCGTGCTCAGAGGTCTAGAGTGGCATCAGAAGGAAAGGCCAACAAAAAACAATCACCCTACAGAATAACCACAGAGGACAACTTCTTCATGCATATGTATAGTGAAATGGAGAGGAGTTTGGAAGAGAACACCAAGATTGTGGAGATCGATGTTTGTGAATCCAAAGGTAACTCGAGAGACAGAAACAGCACTGCAAATCATGGTTATCGCGAATCATTTGAGCATAGATTTTCTACATATTATTCATCAAATGGTTCATACTCAAAGGATGAAAACTACAATGTATCACCTGCACCATCAACACTGACAGAACTAAGTCCAAGAGCATGCAGTGGGCATTTTGAGGAATGTTCCTTCAGTACAGCACAAAGCAGTCCCCATTACTATTCAGCTGTGTCAAGAGTAGAGGATTCAAAGCTTCCCTTTGCTTTCCCTAGACCAGCTTACACAGAATCTATGTCCTATGACTACCCTTTATTTCCAAATTACATGGCTAACACAGAATCATCAAGGGCCAAAGTCAGATCACAAAGTGCACCAAAGGCAAGGCCAGATTCATATGAGAGGCAACCAAGCCGGCGAAGAGCCTCAATGGAAGGAAGAAATGTCCCAAGACCAGTGAGGATGCAGAGGTCATCTTCACATGTGGGTGTCACTGCCCAAAACTACCAATATCCATGGTCAATTAAGCTTGACAGGTCCACAGTAAGTGAATGTGGCTCTACAAGTACAGTGCTCACAAACTCTAATTACTGCAGATATCTTGCTGCATATGAGTCTCATGGACATAGGTACTGA 1341 0.4348 MGKTSKWLKNLLTGKKDKEKEKEKCATNLCLSNGSENPTTPISTIPKEKRRWSFRRSSASKEMNLAESSVTTSILHTNADAENDQRKQAVMAMAVGVAIASAVSPDAMICLTPCSNETTSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQARETLRCMQALVIAQARARAQRSRVASEGKANKKQSPYRITTEDNFFMHMYSEMERSLEENTKIVEIDVCESKGNSRDRNSTANHGYRESFEHRFSTYYSSNGSYSKDENYNVSPAPSTLTELSPRACSGHFEECSFSTAQSSPHYYSAVSRVEDSKLPFAFPRPAYTESMSYDYPLFPNYMANTESSRAKVRSQSAPKARPDSYERQPSRRRASMEGRNVPRPVRMQRSSSHVGVTAQNYQYPWSIKLDRSTVSECGSTSTVLTNSNYCRYLAAYESHGHRY* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1032 446 Gene3D - 120 173 - -
Apr8g1032 446 PANTHER IQ-DOMAIN 5-RELATED 1 427 - -
Apr8g1032 446 SMART iq_5 121 143 IPR000048 GO:0005515
Apr8g1032 446 SMART iq_5 144 165 IPR000048 GO:0005515
Apr8g1032 446 MobiDBLite consensus disorder prediction 1 20 - -
Apr8g1032 446 MobiDBLite consensus disorder prediction 349 396 - -
Apr8g1032 446 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Apr8g1032 446 MobiDBLite consensus disorder prediction 367 382 - -
Apr8g1032 446 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Apr8g1032 446 Pfam IQ calmodulin-binding motif 124 142 IPR000048 GO:0005515
Apr8g1032 446 Pfam IQ calmodulin-binding motif 149 165 IPR000048 GO:0005515
Apr8g1032 446 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 427 - -
Apr8g1032 446 Pfam Protein of unknown function (DUF4005) 328 382 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1032 Apr-Chr8 13160830 13163074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1032 1 436 IQD Protein Family AT4G14750 46.374 5.54e-94 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1032 - - pvu:PHAVU_007G277500g 593.578