Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1025 ATGGAGGGGCTTCATGAAAGTGGTCCTCCACCATTCCTCACAAAGACATATGACATAGTTGATGATGGTTCCACTGATGAGATAGTTTCATGGAGCAGAGGAAATAACAGCTTTGTTGTGTGGGATCCTCAAGCATTTTCCATTACCCTTCTCCCTAGATACTTCAAGCACAACAACTTCTCCAGCTTTGTACGACAGCTTAACACCTATGGGTTTAGAAAGGTAGATCCAGATAGGTGGGAGTTTGCTAATGAAGGGTTTCTTAGAGGACAAAGGTATTTGTTGAAGAATATAAGGAGGAGGAAGACAACACAACCTCAGCAACCACAGCAAGTTTTGGACCCTTGTGTTGAAGTGGGGCGGTTTGGATTGGATGGAGAAGTTGATCGGTTGAGGCGTGACAAGCAAGTTCTAATGGTGGAGCTGGTGAAGCTTAGGCAACAACAACAGAACACTAGAACTAACCTTCAGTCAATGGAAAGTAGGCTTAAAAAGACTGAGCAAAAGCAGCAACGAATGATGCAATTTTTGGCAAGAGCAATGCAGAACCCCGACTTCTTGCAACAATTAGTTCAACAAAAGGAATGGAGGAAGGAGTTGGAGGAAGCATTTTCCAAGAAAAGAAGAAGACCAATTGATCAAGGGCCTAGTAATATTGAGGTAGCTGAATTGGGTTATGCTGAAGAATGCTCAACTTTTGTTAAACTTGAACAGCAAGAGTACACTGACATATCAGAGTTTGAGGTTTCTGACATTGACCTTGTTATGAACATGGGGGAACAAAGTGGAAGCCAAAAGAACACCGAGGAAGAGAATGGAGCTGAACTTGAAAGTGGGAATGAAGACATTGAGGAAGTGTTTTGGGAAGATTTTTTGTATGAGAGTACTGAAGAAGATCTACTAGGATTGCAAGAAGATGATGAAGATATTAGTGTGTTGGCTGAGGAACTTGGTTATTTAGCCTCAACTCCTAAGTAG 978 0.4202 MEGLHESGPPPFLTKTYDIVDDGSTDEIVSWSRGNNSFVVWDPQAFSITLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRYLLKNIRRRKTTQPQQPQQVLDPCVEVGRFGLDGEVDRLRRDKQVLMVELVKLRQQQQNTRTNLQSMESRLKKTEQKQQRMMQFLARAMQNPDFLQQLVQQKEWRKELEEAFSKKRRRPIDQGPSNIEVAELGYAEECSTFVKLEQQEYTDISEFEVSDIDLVMNMGEQSGSQKNTEEENGAELESGNEDIEEVFWEDFLYESTEEDLLGLQEDDEDISVLAEELGYLASTPK* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1025 325 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g1025 325 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g1025 325 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g1025 325 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g1025 325 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g1025 325 Coils Coil 128 169 - -
Apr8g1025 325 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 1 313 - -
Apr8g1025 325 SUPERFAMILY "Winged helix" DNA-binding domain 7 101 IPR036390 -
Apr8g1025 325 MobiDBLite consensus disorder prediction 261 281 - -
Apr8g1025 325 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 313 IPR027725 -
Apr8g1025 325 Gene3D - 4 103 IPR036388 -
Apr8g1025 325 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1025 Apr-Chr8 12890438 12892096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1025 1 323 HSF AT3G22830 58.873 2.24e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr8g1025 HSF_DNA-bind 2.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1025 K09419 - qsu:112016413 452.981