Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1022 ATGCCAGTGAGACAGATGAGAGAGAGCTCAGAACAGCACCTTGTGATCAAACCCCATTTGCAGAATCCCATGAATGCAGCTAAGAAGGTTCCTAGAGCTGTGCAAAATGGCAAAGGTCCACCACCACCACCACAAGAACCACACAACCAAGCTTCACCTCAGGCAAGGAACAAGGGGAGACGAAGGGGGAGAGGTGGCAGAAAGTGTGATCAAGGTGATGTTTTGATGAGACCCAGTTGCAGACCCTGCACTGTTTTGACAAGTACTGTTGAAGATGATAGCAACATGTGTGATGACATAGAGATGGGTTACCCTACTTCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGATATGGACAAGTTGGGACAAAATGTATTGTGAAGGCTAACCACTTCTTTGCAGAGCTACCAGACAAGGACTTGAACCAGTATGATGTCAGTATTACCCCTGAAGTGTCTTCCAAGGCAGTAAACAGGTCCATCATAGCAGAGCTTGTGAGGCGGTATAAAGAGTCTGACCTTGGGATGAGACTTCCTGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGGCACTTCCCTTTTCCTGGAGAGAGTTTAAGATAAAGATTGTAGATGATGAGGATGGAGTTAATGGCCCCAAAAGGGAAAGAGAATATAGAGTGGTGATAAAGTTTGTTGCTAGGGCAAACTTGCATCACTTGGGCCAGTTTCTAGCCGGTAAGCGTGCTGATGGTCCACAGGAGGCACTCCAAATACTTGACATTGTACTGAGAGAGCTATCTTCTAAGAGGTTTTGTCCAATTGGGAGGTCCTTCTTTTCACCTGATCTTAGAGCACCACAACGGCTTGGAGACGGTTTGGAGTCGTGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGCCTTTCACTCAATATTGATATGGCCTCTGCTGCATTTATTGAACCTCTTCCAGTAGTGGAATATGTTGGCCAGCTATTAGGGAATGATATCCTGTCAAGGCAATTCTCTGATGCTGATCGTGTTAAGATTAAGAAAGCCCTTAGAGGAGTAAAAGTTGAAGTAACCCATAGAGGGAGTGTTAGAAGAAAGTATCGTGTTTCAGGGTTGACTTCTCAACCAACCAGAGAACTTGTGTTTCCCGTTGATGAGAACTCAACTATGAAGTCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACAATTAAATATACTCATCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAAGCAAACTACTTACCTATGGAGGCCTGCAAAATTGTTGAGGGACAACGTTATACAAAAAGGTTGAATGAGAAGCAAATTACTGCTCTCCTTAAAGTTACTTGTCAAAGACCTCGTGATCGAGAAAATGACATTTTGCGGACCATTCAGCATAATGCCTATGATCAGGACCCTTATGCAAAGGAATTTGGGATTAAGATCAGTGAAAAGCTAGCTTCAGTAGAAGCACGAATTCTTCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGTAAAAAATTGTTTACCCCAAGTTGGACAGTGGAATATGGTGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATAAATTTTTCACGAAATGTACAAGATAGTGTTGCTCGGACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCAGGTGGAGAAAGCTTTAAAGCATGTTTACCATGTGTCAACAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCAGATAACAATGGCTCCCTTTATGGTGATCTAAAGCGAATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTTTGACAAAGCATGTCTTTAAGATCACTAAGCAGTACTTGGCTAACGTGTCTTTGAAAATCAATGTCAAGATGGGAGGTAGAAACACTGTTCTTGTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACGCATCCTGAAAACGGAGAAGACTCTAGCCCCTCAATAGCAGCTGTAGTAGCATCCCAAGATTGGCCCGAAGTGACGAAATATGCAGGTTTGGTGTGTGCTCAAGCTCATAGACAGGAACTCATACAAGATTTGTACAAAACGTGGCATGACCCTGTTCGTGGCTTAGTTAGTGGTGGCATGATACGAGATTTGCTGATTTCCTTTAGAAAGGCAACGGGACAGAAGCCTCTAAGGATTATATTTTATAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGTAAGGCTTGTGCTTCTTTAGAACCAAACTACCAACCTACAGTAACTTTCATAGTTGTACAAAAAAGACATCATACTCGGTTGTTTGCAAATAACCACAGGGACAGGAACAGTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATTTGTCATCCAACAGAATTTGATTTTTATCTATGCAGTCATGCTGGCATTCAGGGCACAAGTCGTCCAGCCCATTATCATGTTCTATGGGATGAAAACAACTTCACAGCAGATGGGATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGTTTCTACATGGAACCAGACCTGCAGGAGAATGGCTCCTCAGGTGGTGGCAGTCATGGTTCTAAGGCAACACGCGTAGGTGGGGACTGCGGCGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTATTGTTAG 2925 0.4274 MPVRQMRESSEQHLVIKPHLQNPMNAAKKVPRAVQNGKGPPPPPQEPHNQASPQARNKGRRRGRGGRKCDQGDVLMRPSCRPCTVLTSTVEDDSNMCDDIEMGYPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVSITPEVSSKAVNRSIIAELVRRYKESDLGMRLPAYDGRKSLYTAGALPFSWREFKIKIVDDEDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADGPQEALQILDIVLRELSSKRFCPIGRSFFSPDLRAPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVGQLLGNDILSRQFSDADRVKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKVKNCLPQVGQWNMVNKKMINGMTVSRWACINFSRNVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGLVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPTVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQENGSSGGGSHGSKATRVGGDCGVKPLPALKENVKRVMFYC* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1022 974 Pfam Argonaute linker 1 domain 269 318 IPR014811 -
Apr8g1022 974 Gene3D paz domain 314 439 - -
Apr8g1022 974 ProSiteProfiles Piwi domain profile. 609 930 IPR003165 GO:0003676
Apr8g1022 974 Pfam Mid domain of argonaute 518 595 IPR032473 -
Apr8g1022 974 SMART PAZ_2_a_3 325 457 IPR003100 GO:0005515
Apr8g1022 974 CDD PAZ_argonaute_like 320 434 - -
Apr8g1022 974 SMART Piwi_a_2 609 930 IPR003165 GO:0003676
Apr8g1022 974 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 973 - -
Apr8g1022 974 Pfam N-terminal domain of argonaute 125 259 IPR032474 -
Apr8g1022 974 SUPERFAMILY PAZ domain 315 475 IPR036085 GO:0005515
Apr8g1022 974 Pfam PAZ domain 343 451 IPR003100 GO:0005515
Apr8g1022 974 MobiDBLite consensus disorder prediction 1 73 - -
Apr8g1022 974 CDD Piwi_ago-like 479 929 IPR045246 -
Apr8g1022 974 Gene3D - 678 974 IPR036397 GO:0003676
Apr8g1022 974 SUPERFAMILY Ribonuclease H-like 601 931 IPR012337 -
Apr8g1022 974 Pfam Argonaute linker 2 domain 461 507 IPR032472 -
Apr8g1022 974 ProSiteProfiles PAZ domain profile. 321 435 IPR003100 GO:0005515
Apr8g1022 974 PANTHER PROTEIN ARGONAUTE 10 57 973 - -
Apr8g1022 974 Gene3D - 499 672 - -
Apr8g1022 974 Pfam Piwi domain 610 929 IPR003165 GO:0003676
Apr8g1022 974 SMART DUF1785_2 268 320 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1022 Apr-Chr8 12809208 12817555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1022 1 974 Eukaryotic Initiation Factors Gene Family AT5G43810 81.181 0.0 1644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1022 K11593 - gmx:100819073 1819.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1022 8 12809208 12817555 Apr8g1022 8 12809208 12817555 ECH