Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1003 ATGGGAAGGGTGAAACTTTATCTCTTCTCTGTTCTCTGGCTTCTACTTGTATTCATGCTTCCTTCTACACAGGCTCAAACGGCGAGGCAACAGAACAACACAGGGTTCAGCTGCAGGGGAAGCTTCAAATGCGAGGCCTACGCATTCTACCGGGCCAGAGGCCCAAACTTTCTGGACCTGGCCGCGATAGCGGACCTCTTCGGCGTTAGCAGGCTCATGATTTCAAGGCCCAGCAACATCTCCTCCCCTTCCTCCCCCTTAGTCCCTGAACAATCCCTCTTCGTTCCCATACCCTGCTCTTGCAACCCCGTCAACAACACCTTCGGCTCCATCTCCTACGCCAACATCTCCTACACCATCAAACCCAACGACACCTTCTACCTCGTCTCCACCTTCAGTTTCCAGAACCTCACAACCTACCCCTCCGTCGAAGTCGTTAACCCCTCCCTCCTTGCCACTAACCTCTCCATCGGCGACAACGTTATCTTCCCCGTCTTCTGTAAGTGCCCCACAAATAATAGGTCAAAATACATTATCTCCTACGTTGTCCAACCCTCTGACAACCTATCATTCATCGCTTCGAGGTTTGGCTCCGATGAACAGTCCATAATTGACCTCAACGGTCGGACTCTGAATGATTACGACACCATCTTTGTTCCGGTTACCCGCTTGCCGGTTCTGGCCCAGCCCACGGTGGTTCCTTCTGCGCCGCCACCGGGAAATGGAACTGTGAGTGGAAACGGTTCTGATGATAGGACAGGGACTGTGCGAGGGTTGGCGATAGGGTTGGGGGTTGCGGGGTTGTTGTTGATTTTGGTGAGTGGGGTGTGGGTTTATAGGGAGGTTGTGTTGAAGAAGGAGAGGCATTGGGATGAGGAGGAGCAAAGGAAGAAGGAGAAGGAGGAGTTTTTGTATTTGGGAGGGAGAGAGGGGAAGAAGATGGAAGCGAAGTTGATGGCTAATGTTTCAGATTGTTTGGACAAGTATAGGGTGTTTGGGATTGAGGAGTTGGTGGAAGCCACCGATGGGTTTGACGAGAGTTGCTTGATTCAAGGGTCGGTGTATAAAGGCTCCATTGATGGAGATGTCTTTGCTATCAAGAAGATGAAGTGGAACGCCTACGAGGAACTCAAGATCTTACAGAAGGTCAACCATGGGAATCTGGTGAAGTTGGAGGGGTTTTGCATAGACCCAGAAGAAGTAAATTGCTATCTAGTCTATGAATATGTGGAGAATGGATCCCTATACTCATGGCTGCATGAGGACAGAAGCGAGAAGCTGAACTGGAAAACGAGGCTGCGAATAGCCATTGACATTGCCAATGGCCTCCAGTACATCCACGAGCACACAAGGCCACGAGTGGTGCACAAAGACATAAAGAGCAGCAACATTCTCTTGGACTCCAACATGAGAGCCAAAATTGCCAATTTTGGGCTTGCAAAGTCAGGAATGAACGCCATTACCATGCACATTGTAGGAACACAGGGCTACATTGCCCCTGAATATCTAGCTGATGGTGTGATCTCAACAAAGATGGACGTGTTCTCTTTTGGGGTTGTGTTGCTCGAACTAATCTCTGGGAAGGAAGCTATTGATGAGGAAGGGAATCTCTTATGGGCAAGTGCCATCAAAACTTTTGAAGTGGATAATGAGCAAGAGAAGGCTAGGAGACTGAAGGAATGGTTGGATAAGGCTATTTTAAGGGAGACTTGCTCAATGGAAAGTTTGACGGGTGTTCTCAACATTGCAATTGCTTGTTTCCTTAGAGACCCATCAAAGAGGCCCAGCATAATGGATATTGTCTATGCACTAAGTAAAAGTGAAGACATGGGCTTTGACATCTCAGATGAAGGGATTGGTTCCCCTCGGCTAGTGGCTAGGTAA 1884 0.4894 MGRVKLYLFSVLWLLLVFMLPSTQAQTARQQNNTGFSCRGSFKCEAYAFYRARGPNFLDLAAIADLFGVSRLMISRPSNISSPSSPLVPEQSLFVPIPCSCNPVNNTFGSISYANISYTIKPNDTFYLVSTFSFQNLTTYPSVEVVNPSLLATNLSIGDNVIFPVFCKCPTNNRSKYIISYVVQPSDNLSFIASRFGSDEQSIIDLNGRTLNDYDTIFVPVTRLPVLAQPTVVPSAPPPGNGTVSGNGSDDRTGTVRGLAIGLGVAGLLLILVSGVWVYREVVLKKERHWDEEEQRKKEKEEFLYLGGREGKKMEAKLMANVSDCLDKYRVFGIEELVEATDGFDESCLIQGSVYKGSIDGDVFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEVNCYLVYEYVENGSLYSWLHEDRSEKLNWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVISTKMDVFSFGVVLLELISGKEAIDEEGNLLWASAIKTFEVDNEQEKARRLKEWLDKAILRETCSMESLTGVLNIAIACFLRDPSKRPSIMDIVYALSKSEDMGFDISDEGIGSPRLVAR* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1003 627 SMART serkin_6 344 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1003 627 ProSiteProfiles LysM domain profile. 179 226 IPR018392 -
Apr8g1003 627 CDD LysM 179 219 IPR018392 -
Apr8g1003 627 PANTHER - 1 625 - -
Apr8g1003 627 Pfam LysM domain 181 219 IPR018392 -
Apr8g1003 627 Gene3D Phosphorylase Kinase; domain 1 314 409 - -
Apr8g1003 627 MobiDBLite consensus disorder prediction 230 251 - -
Apr8g1003 627 Gene3D LysM domain 180 219 IPR036779 -
Apr8g1003 627 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 625 - -
Apr8g1003 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Apr8g1003 627 SUPERFAMILY Protein kinase-like (PK-like) 329 604 IPR011009 -
Apr8g1003 627 Pfam Protein kinase domain 360 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1003 627 Gene3D Transferase(Phosphotransferase) domain 1 410 616 - -
Apr8g1003 627 ProSiteProfiles Protein kinase domain profile. 326 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1003 Apr-Chr8 12442945 12447293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1003 8 606 Receptor kinase-like Gene Family AT2G23770 32.453 5.25e-84 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Apr8g1003 Pkinase 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1003 - - gmx:100802872 937.947