Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1002 ATGGATAGCACAGTGGCATATGAGAACGATCTGAACCTGAAGGCAACAGAACTTAGGTTGGGGTTGCCAGGTACAGAGGAAAAGGAGGAGAAAACCGTGCCTGGTTTTAGAAACAATAAAAGGCTATTGCGGGAAACTTCTCAAGAGTCTGTTTCCATTTCCAATGCCTCCCATGACCAACATGTCCAGAGTGGTGCAGCCCCTCCTGCCAACAGGGCAAAGATAGTGGGGTGGCCACCAATCAGATCGTACAGGAAGAACAGCGTTCAAGAGGGTGAGGGAGATGGGATCTATGTGAAAGTGAGCATGGATGGAGCCCCTTACCTCAGAAAGATTGACTTGAAGCTCTATAGAGGCTATCCTCAACTACTCAAGGCTTTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTACAAGGGTTCTGAATATGCACCTACCTATGAAGACAAAGACGGTGACTGGATGCTGGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGAATAATGAAAGGCTCAGAAGCTAGAGGACTGGGTTGTGTTGTATGA 582 0.4674 MDSTVAYENDLNLKATELRLGLPGTEEKEEKTVPGFRNNKRLLRETSQESVSISNASHDQHVQSGAAPPANRAKIVGWPPIRSYRKNSVQEGEGDGIYVKVSMDGAPYLRKIDLKLYRGYPQLLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGSEARGLGCVV* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1002 193 SUPERFAMILY CAD & PB1 domains 86 182 - -
Apr8g1002 193 ProSiteProfiles PB1 domain profile. 96 183 IPR000270 GO:0005515
Apr8g1002 193 MobiDBLite consensus disorder prediction 45 64 - -
Apr8g1002 193 Gene3D - 91 193 - -
Apr8g1002 193 PANTHER AUXIN-INDUCED PROTEIN 1 190 - -
Apr8g1002 193 Pfam AUX/IAA family 40 190 IPR033389 -
Apr8g1002 193 MobiDBLite consensus disorder prediction 45 71 - -
Apr8g1002 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 190 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1002 Apr-Chr8 12436382 12437875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1002 99 189 B3 DNA Binding Superfamily AT2G46530 38.462 1.36e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr8g1002 AUX_IAA 5.5e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1002 K14484 - gmx:100800212 322.783