Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0988 ATGCCACAACAACTCTTTGCCAGAGATATTGAGAATAGAAAGCTCAAGCACAAGATCGAGGAGGCACATGCCGTGGATGCTGAAGGTTCAGACTTATTACTATCTCTTAGTCTTGGCAATGACAAAATGGTGGGTGAAACTTCATCCAATTTCACCTTCACATCCTTGAAAGGTGATGAGGATCCATCAGGTTTTGCTCAAAAACCTTTGGAAAACACTAATCTTCATGTGATCAAGCCTAAGCAACGCCAATTCTCCTGCAAGTTTTGCAACAAGAAATTCCCAAGCTCTCAAGCTTTGGGTGGACACCAAAACGCTCATAGGCGTGAAAGAGTGCTCTCAAGGATAGACAAAGAATTTGAGATGGGAACATTTGGTATTGGTGCTCACTTTTGTCCATACTCAACCTTGGCACATCATCATCCTTTACATGGGTCGATACCCTTTTATAATGGGACTCATCTGCACCCTATGGCTCACATGCCATTTCCTCAATTTGCACCAGGCTATGGTAACCAAGGTTTGCCTAAGACTTCTATCCCAGGGCATCGATTTGGGATGACCAACCCTTTGGGTGTAGCTACTGAACCTCCACATGTTGAAACTGCACAAAATCTGTACCACAGGAATGTGGGGTTTGGTTCTGAACTTAACCAAGTTCCTTCCCTTGATGCATCTAGAAGAGCTACCATGGCCCATTCTGATCTTAGTAGTCTTCTAAGAAATCATTGTACTGGGAACCAACAATTTTAA 753 0.4329 MPQQLFARDIENRKLKHKIEEAHAVDAEGSDLLLSLSLGNDKMVGETSSNFTFTSLKGDEDPSGFAQKPLENTNLHVIKPKQRQFSCKFCNKKFPSSQALGGHQNAHRRERVLSRIDKEFEMGTFGIGAHFCPYSTLAHHHPLHGSIPFYNGTHLHPMAHMPFPQFAPGYGNQGLPKTSIPGHRFGMTNPLGVATEPPHVETAQNLYHRNVGFGSELNQVPSLDASRRATMAHSDLSSLLRNHCTGNQQF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0988 250 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Apr8g0988 250 Pfam C2H2-type zinc finger 85 110 - -
Apr8g0988 250 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 247 - -
Apr8g0988 250 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Apr8g0988 250 Gene3D Classic Zinc Finger 70 122 - -
Apr8g0988 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Apr8g0988 250 PANTHER ZINC FINGER PROTEIN JAGGED 1 247 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0988 Apr-Chr8 12072988 12073740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0988 83 162 C2H2 Transcription Factor Family AT1G80730 40.860 2.96e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0988 zf-C2H2_6 2.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0988 - - aprc:113874385 331.257