Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0986 ATGTCAAATAGTAGGAACACTCACTGGTGCTACAGTTGCAGGAGGCCAGTTCGGCTGGGACGGCGAGATATGGTTTGTCCTAGCTGTAATGAGGGATTTGTTCAAGAACTTAATGATATGATGCATGTTAACCCTCTGGACTTCTTAGGAGTGGACAACAATGAAGAGCGAGACCAAAGGTTTGGACTCATGGAAACTTTCTCTGCTTTCATGAGGCATCAAATGGCAGATAGGGTCCATAGCCGAGATATCAGGGCACATTCAGACTCAATTCCCGAACACAATGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATTCCTTTCAGATTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAACGGTGCTCCAGGAATTGGTCTGACAAGAGGTAACACAGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGTTTTCAGCTAACAACAGGCAAGGTCCCCCACCAGCGTCCAGGTCCTCTATAGATGCGATGCCTACTGTCAAGATCACGCAGAGGCATCTTCGATCAGATTCACACTGTCCTGTGTGCAAAGATAAATTTGAGCTGGGGTCTGATGCAAGGCAAATGCCATGCAACCATTTATATCACTCAGATTGTATTGTTCCATGGTTGCTGCAGCATAACACCTGCCCTGTCTGCCGTCAAGAGTTGCCACTGCAAGGATTGAGCAGTAACCGTGGTGCAAATGGTAGAAGTAGAAGCAGTTATAGTAGCAGTGGCAATGGAAGGGTAAGTAGTGGTAGGGAGAACCAAGGAAGGAGAAACCCGTTTTCCTTTTTGTGGCCTTTCCGTTCTTCAAATTCTAGCCGTAATGATGAAGCAACTGCAAGCAGCTCCCCAACACCAACTATCCCTGAGAATAGTCATCATAGAGGGTATTCTGGGTGGCCCTTTGAATGA 939 0.4654 MSNSRNTHWCYSCRRPVRLGRRDMVCPSCNEGFVQELNDMMHVNPLDFLGVDNNEERDQRFGLMETFSAFMRHQMADRVHSRDIRAHSDSIPEHNAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQFSANNRQGPPPASRSSIDAMPTVKITQRHLRSDSHCPVCKDKFELGSDARQMPCNHLYHSDCIVPWLLQHNTCPVCRQELPLQGLSSNRGANGRSRSSYSSSGNGRVSSGRENQGRRNPFSFLWPFRSSNSSRNDEATASSSPTPTIPENSHHRGYSGWPFE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0986 312 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Apr8g0986 312 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Apr8g0986 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 294 - -
Apr8g0986 312 MobiDBLite consensus disorder prediction 273 301 - -
Apr8g0986 312 SUPERFAMILY RING/U-box 166 233 - -
Apr8g0986 312 Pfam Ring finger domain 185 227 IPR001841 -
Apr8g0986 312 MobiDBLite consensus disorder prediction 234 312 - -
Apr8g0986 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 3 294 - -
Apr8g0986 312 MobiDBLite consensus disorder prediction 234 266 - -
Apr8g0986 312 SMART ring_2 186 226 IPR001841 -
Apr8g0986 312 CDD RING-H2_RNF126_like 186 227 - -
Apr8g0986 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0986 Apr-Chr8 12006322 12008940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0986 145 277 C3H Transcription Factor Family AT1G68180 40.602 5.53e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0986 K11982 - gmx:100787523 544.658