Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0978 ATGAGAGAAGAGGACTCAAATTGGTTCTCAAGATGGGAAGAGGAACTCCCTTCCCCAGAGGAACTCATGCCTTTGTCCCAAACCCTAATAAGCCCTGATCTTGCCGTAGCTTTTGACATAAGAAACACCTCACAGCAGCAACAACAACAACAACAGCTACTACAAGTTTCTCATCCACCACCTCCTTCGTCAGATCCTTTGCCTTCTCAAGGCAATCTCACCCAACCCAGTTCCGCGGAATTCACTGATTCCGCGGAATTGGGTTCGGGGAATGTGGGCGAGGAACCCGCCCGCACCCTGAAGAGGCCACGCCTGGTGTGGACCCCACAACTCCACAAGAGGTTTGTGGATGCTGTGGCCCACTTGGGGATCAAAAATGCTGTGCCTAAGACCATAATGCAGCTTATGAGCGTCGACGGATTGACTAGAGAAAATGTCGCCAGCCATTTGCAAAAATACCGCCTTTACTTGAAACGCATGCAGGGGTTGTCTGCTGGCGGTGGCGGAAACGGCGGAGCTGCCTCTGCCGATCCCGCCACCGACCATTTGTTTGCCAGCTCGCCCGTGCCGCCACATTTCTTGCATCCAGTGGCACGGGCCAGTTCTGAGCATTTCCTGCCGTTTGTGCCGGTTCCGGCTTTGCGGCACCACCTTCAACAGCAGCAGATGGCGGTGGCTAGCCACCCGCAGTATCACCGGCAGGTGGCGCATTTCGGTTCGCCCCCGAATGGACACTTTGAGCTTCCCTTTCTGTCAAGGCAGTCTCAAAATGTTCAGAGGATTGGGGCTCCGGTGCACAGTCCCGTGCCAGGTTACATGGAGGACATGGAATCAGCCAATGCTACTGGAGGGAGAAAGGTTCTTACTTTGTTTCCAAATGGAGATGATTGA 891 0.5398 MREEDSNWFSRWEEELPSPEELMPLSQTLISPDLAVAFDIRNTSQQQQQQQQLLQVSHPPPPSSDPLPSQGNLTQPSSAEFTDSAELGSGNVGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAGGGGNGGAASADPATDHLFASSPVPPHFLHPVARASSEHFLPFVPVPALRHHLQQQQMAVASHPQYHRQVAHFGSPPNGHFELPFLSRQSQNVQRIGAPVHSPVPGYMEDMESANATGGRKVLTLFPNGDD* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0978 296 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Apr8g0978 296 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 296 IPR044841 GO:0003700|GO:0006355
Apr8g0978 296 Gene3D - 99 161 - -
Apr8g0978 296 MobiDBLite consensus disorder prediction 1 25 - -
Apr8g0978 296 MobiDBLite consensus disorder prediction 68 85 - -
Apr8g0978 296 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Apr8g0978 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Apr8g0978 296 MobiDBLite consensus disorder prediction 40 58 - -
Apr8g0978 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Apr8g0978 296 MobiDBLite consensus disorder prediction 1 18 - -
Apr8g0978 296 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 296 - -
Apr8g0978 296 MobiDBLite consensus disorder prediction 40 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0978 Apr-Chr8 11835257 11837498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0978 1 296 G2-like Transcription Factor Family AT3G10760 60.174 8.01e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr8g0978 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0978 - - jre:108983410 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0978 8 11835257 11837498 Apr8g0978 8 11835257 11837498 ECH