Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0975 ATGGCGCAGAGTAATTGGGAAGCAGATAAAATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCATAATACTGCTAAGGCATTCATGTCAGAAGGAAAGGTTTCTCCGGATCCAGTAGCAATTGATGCTCCTGGCGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATATTTATTGCAAGGACAAATGAGAAACATTCTGAGACAGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCAAAGGAACAACAACAACTACAAATGCAGCAGTTTCAATTAATGCGCCAAGCTCAGCTGCAAAGAAGAGATTCTAACCATCCTCCCATTGGAGGTCCTGCAAATGCTATCACTACAGAAGGAATGCTTGGGCAATCTACTGCCAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGAATGAAGCACTCTAACCCCATGGATACGGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACAGCGGCTTTGCAGCAAATCCAGGCTAGAACTCAGCAAACCCCTGATATCAAAGGTGATGTCAACATGGGTACCATCCAGAGATCCTTGCCTATGGATCCTTCAATTTATGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATTACAAATGCAGGATTAAATCCAGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGTCCCGGGTTTGGTGCACAAGTTCAAAAGCCTCTCCTCCAAAGTTCAAATCAGTTTCAGCTTTTACCACAACAACAACAACAGCAGATCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCGCAGAGATTAAGGGGATTAGCTAGGGGAAGTTTGAATGCCAAAGATGGTCAATCCATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGGTCCAACAGTCTACCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAACTGAATAACCGGAAAAGGAAAGGGCCTACTTCTTCAGGAGCTGCCAACAGTACTGGAACAGGAAATACACTAGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGAGTTGCTATGCCGGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTAATCATGTATGGTGCTGATGGAGCAGGTGGTCTTGCATCCTCCACAAATCAGCTGGACGACATGGAGCATTTTGCAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGACGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGGGAGCATGCTACTGATGCTTCAAAAGGCTTTTCCTTTAATGAAGTTGGTTCCATTCGCAAAAGCAACAGTAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAAATATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACGCTGCAAACAGAAAGCACTCCAGAGGAGCACAATCTTATTATTACTGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACTACTGTGCGGCTGTGGGATGCTGCAGATCCAAGCTTTTCTTTACAGACATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCATCCAAAGAAAAACGACCTATTCTGTTCTTGTGATGATAACAATGAGATTCGCTTATGGAATATCGGTCAATATTCTTGCACTCGTGCTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAACCAAGGAGTGGCCACCTACTGGCGGCAGCAAGTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACAGAGAGGCAGATGCACACATTACAGGGACACTCTGCAGATGTGCACTGTGTATGTTGGGATGTAAATGGAGAATACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTAACTCTGGGGATTGCATTCACGAACTTAGTGCCAGTGGACACATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCACTACCCTCTTGGTTATTGGTGGATACCAGTCATTGGAGCTATGGAACCTGGCCGAGAATAGATCCATGTCAATTTCAGCTCATGAATGTGTGATATCTGCCTTAGCACAATCACCAGTGACAGGAATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2337 0.4373 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMSEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKAKEQQQLQMQQFQLMRQAQLQRRDSNHPPIGGPANAITTEGMLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKGDVNMGTIQRSLPMDPSIYGQGGMQSKPGITNAGLNPGVGGLTLKGWPLTGIDQIRPGFGAQVQKPLLQSSNQFQLLPQQQQQQILAQVQAQGNIGNSPVYGDMDPQRLRGLARGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQVQQSTSQQQQDPLHPQQLNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMPGNLQNVAGVSKGLIMYGADGAGGLASSTNQLDDMEHFADVGSLDDNVESFLSQDDGDGRDLFGTLKREHATDASKGFSFNEVGSIRKSNSKVVCCHFSSDGKILASAGHDKKVVLWNMETLQTESTPEEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQTYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRLWNIGQYSCTRAFKGGSTQVRFQPRSGHLLAAASGSVVSLFDVETERQMHTLQGHSADVHCVCWDVNGEYLASVSQESVKVWSLNSGDCIHELSASGHMFHSCVFHPSYSTTLLVIGGYQSLELWNLAENRSMSISAHECVISALAQSPVTGMVASASHDKSVKIWK* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 531 - -
Apr8g0975 778 Pfam WD domain, G-beta repeat 501 528 IPR001680 GO:0005515
Apr8g0975 778 Pfam WD domain, G-beta repeat 537 570 IPR001680 GO:0005515
Apr8g0975 778 Pfam WD domain, G-beta repeat 658 694 IPR001680 GO:0005515
Apr8g0975 778 Pfam WD domain, G-beta repeat 578 614 IPR001680 GO:0005515
Apr8g0975 778 Pfam WD domain, G-beta repeat 745 778 IPR001680 GO:0005515
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 778 - -
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 570 IPR001680 GO:0005515
Apr8g0975 778 SMART Lish 8 40 IPR006594 GO:0005515
Apr8g0975 778 ProSitePatterns Trp-Asp (WD) repeats signature. 515 529 IPR019775 -
Apr8g0975 778 Gene3D - 630 778 IPR015943 GO:0005515
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 615 - -
Apr8g0975 778 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 778 - -
Apr8g0975 778 SMART WD40_4 574 614 IPR001680 GO:0005515
Apr8g0975 778 SMART WD40_4 656 694 IPR001680 GO:0005515
Apr8g0975 778 SMART WD40_4 739 778 IPR001680 GO:0005515
Apr8g0975 778 SMART WD40_4 531 570 IPR001680 GO:0005515
Apr8g0975 778 SMART WD40_4 697 737 IPR001680 GO:0005515
Apr8g0975 778 SMART WD40_4 617 653 IPR001680 GO:0005515
Apr8g0975 778 SMART WD40_4 489 528 IPR001680 GO:0005515
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 778 IPR001680 GO:0005515
Apr8g0975 778 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Apr8g0975 778 CDD WD40 492 778 - -
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 538 570 - -
Apr8g0975 778 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Apr8g0975 778 PRINTS G protein beta WD-40 repeat signature 557 571 IPR020472 -
Apr8g0975 778 PRINTS G protein beta WD-40 repeat signature 765 778 IPR020472 -
Apr8g0975 778 Gene3D - 473 629 IPR015943 GO:0005515
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 703 IPR001680 GO:0005515
Apr8g0975 778 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 778 IPR044716 GO:0003714
Apr8g0975 778 MobiDBLite consensus disorder prediction 319 414 - -
Apr8g0975 778 MobiDBLite consensus disorder prediction 322 404 - -
Apr8g0975 778 Pfam LisH 10 36 IPR006594 GO:0005515
Apr8g0975 778 SUPERFAMILY WD40 repeat-like 490 778 IPR036322 GO:0005515
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 537 IPR001680 GO:0005515
Apr8g0975 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 623 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0975 Apr-Chr8 11760778 11775663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0975 575 777 Miscellaneous Gene Families AT5G08390 26.316 4.90e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Apr8g0975 WD40 0.0099 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0975 - - gmx:100797756 1356.66