Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0950 ATGTATTGCAATTTCAAGGAGCATGCTGCTGAATATGTTAAGCAGGCAGTTCACGAGGATGATGCAGGGAACTATAAGAAAGCATTTACTCTTTATATGAATGCATTGGAATACTTAAGGGCCCATTTGAAGTATGAGAAGCACCCTAAGATCAAGGAGGCAATAACTCAAAAATTTGCTCAATACTTGAGGAGGGCTGAGGAGATTAGTGCCATTCTCGATGCGGGAGGTAGTGAAGCAAATGTGAATAGAGATGCAGCAGCAGGTTCTGTGAGACCCAAGACAGATACAAGTAAGGGAGGGCAGAAAGACAAGGAGGATCCTGAAATAGCAAAGCTGAAGGCTGGTCTTGATTCTGTTATAATCAAGGAGAAGCCAAATGTTAGATGGAGTGATATTGCTGGCCTTGAGAGTGCCAAAAAAGCATTACAAGAGGCTGTAATATTGCCTGTTAAGTTCCCACAGTTTTTCACTGGTATAGCGGCTAGTAACAGTAAGAGACAACCATGGAGAGCGTTTCTGTTGTATGGTCCACCAGGCACAGGGAAATCATACTTAGCAAAGGCAGTAGCAACAGAGGCAGACTCTACATTCTTCAGTGTTTCATCATCGGATCTTGTTTCTAAGTGGATGGGTGAGAGTGAAAAGCTGGTTTCAAGTCTTTTCCAAATGGCTCGTGATAATGCTCCTTCGATTATTTTTATTGACGAAATAGATTCTTTATGTGGTCAACGAGGTGAAGGCAATGAAAGTGAAGCATCTAGAAGGATTAAAACTGAACTTTTAGTGCAAATGCAGGGTGTGGGAAACAATGATCAGAAAGTTCTCATTCTTGCAGCCACAAATACTCCTTATGCTCTGGATCAGGCCATTCGAAGACGCTTTGACAAACGCATATACATTCCTCTACCAGACCTGAAGGCAAGGCAGCACATATTTAAGGTGCATCTTGGAGATACCCCTCATAACCTAACTGAAAAAGATTTTGAAGAATTGGCACAAAAAACTGATGGATTTTCTGGTTCAGATATTGCTGTTTGTGTTAAGGATGTACTATTTGAACCTGTCCGTAAAACACACGCTGCTAAGTTCTTCAGGAAGACTTCTAAAGGAATGTGGATTCCTTGTGAACCTACTAGACGAGGAGCTGTTAATATTACCCTGCAGGAACTTGATGCACAAGGCTTTGCTTCAAAGATTCTTCCTCCACCCATCACTAGAGTAGATTTTGATAAAGTATTGGCGAAACAGAAGCCAACTGTAAGCAAGGCTGATCTCAAGGTGCATGAAAGATTCACACAAGAATTTGGAGAGGAGGGATGA 1323 0.418 MYCNFKEHAAEYVKQAVHEDDAGNYKKAFTLYMNALEYLRAHLKYEKHPKIKEAITQKFAQYLRRAEEISAILDAGGSEANVNRDAAAGSVRPKTDTSKGGQKDKEDPEIAKLKAGLDSVIIKEKPNVRWSDIAGLESAKKALQEAVILPVKFPQFFTGIAASNSKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARDNAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLILAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHIFKVHLGDTPHNLTEKDFEELAQKTDGFSGSDIAVCVKDVLFEPVRKTHAAKFFRKTSKGMWIPCEPTRRGAVNITLQELDAQGFASKILPPPITRVDFDKVLAKQKPTVSKADLKVHERFTQEFGEEG* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0950 440 Pfam Vps4 C terminal oligomerisation domain 373 437 IPR015415 -
Apr8g0950 440 Pfam MIT (microtubule interacting and transport) domain 8 70 IPR007330 -
Apr8g0950 440 Gene3D - 126 428 IPR027417 -
Apr8g0950 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 435 IPR027417 -
Apr8g0950 440 ProSitePatterns AAA-protein family signature. 275 294 IPR003960 GO:0005524|GO:0016887
Apr8g0950 440 SUPERFAMILY MIT domain 4 83 IPR036181 -
Apr8g0950 440 CDD AAA 166 303 - -
Apr8g0950 440 Pfam ATPase family associated with various cellular activities (AAA) 174 303 IPR003959 GO:0005524|GO:0016887
Apr8g0950 440 PANTHER AAA DOMAIN-CONTAINING 1 440 - -
Apr8g0950 440 SMART smart 2 81 IPR007330 -
Apr8g0950 440 PANTHER PROTEIN SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 1 440 - -
Apr8g0950 440 Gene3D - 305 420 - -
Apr8g0950 440 SMART AAA_5 169 305 IPR003593 -
Apr8g0950 440 MobiDBLite consensus disorder prediction 84 107 - -
Apr8g0950 440 Gene3D - 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0950 Apr-Chr8 11305696 11317449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0950 168 358 Calmodulin-binding Proteins AT3G56690 36.269 6.86e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0950 K12196 - zju:107413023 721.465