Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0933 ATGGCTATGTTTGATCTCAATATTGACATTAACCATGTTGATGCTGACTCAACCTGGGCACAAAAGGGGGTGCAACTTCCAAGTTTTCCACCTGAAATATCAGATTCTAGAACCTCCAACTCCTCTGTGTGGAACCCTGCAGAAGAAGATTCCTCAAACAACTCTTCTCCCTTCATTTTTGACATACTGAAGAAAGAAAGAGATGGTTCAGAATTTGGTGGCACTGAAAGGGACAAGATGGAACAAAACATGGGACAAGAGGGAGGGATAGTCACAAGAACCCTTTTTCCTGTGACTGTTGATAGAGGAGGTAGAGTGCCTGATTTCAAATTGGGATTGTGGGGGAAGACTCAATGGTTGAACTTGTCATTTCCAGTGAATGATGATGCACAAAATGGAGTGAGAAACTTGCAGCAGAAGCTACCTCATGTAAGGAAAAATAGGCGTGGACCACGGTCTCGCAGCTCTCAGTATCGCGGTGTTACCTTCTACCGTAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCAATCTGCTGCAAGAGCATATGATAGGGCTGCTATTAAATTCCGAGGAGTGGATGCTGATATAAACTTTAGTTTGAGTGATTATGAGGAGGATTTGAATAAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTCCTGTTACTTCGTCGACAAGTCAATGGAATCTCAAGGAGAAGTTCAACAGACAAAGGTTTATTACATGGTCAAGGAGAACCAAGAATGGCACCATATGTTGGCAATATATTTTATCCCAAGTCATCCATCAAGTGTGATGATGGAGAAGTGGAGAACGGTTTTAAGCCCTGTTCCTATAAGGGAGAGATAATTGCAAATTCCAGCATTGGCATAGCTGGCACTTGCCATAATCTTGATTTGAGCCTGGGGATTTCTCCATCCTCTAAAAAATTGAAGCAAAGTGATTGTGGAGGAGGCTTTGCCTTTGGATGTATGGCATCTAAGGTGCCCGATGAAAGAGGAACAATGGAGAAAGATATGGCAGACAGAATAAAACATGTTCCTTCGCAAAGTTTTTCCAACGTGTCGTGGCAACTTTGCAGCAATGGCACCATTGCCTCAGGGCCACTGCTATCAAATGCAGCATCATCAGGATTCGTGTCTTCTTCTAGCTATTTCATCACTCACACTTCCAATCAGCACATGTATTAA 1230 0.4309 MAMFDLNIDINHVDADSTWAQKGVQLPSFPPEISDSRTSNSSVWNPAEEDSSNNSSPFIFDILKKERDGSEFGGTERDKMEQNMGQEGGIVTRTLFPVTVDRGGRVPDFKLGLWGKTQWLNLSFPVNDDAQNGVRNLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQSAARAYDRAAIKFRGVDADINFSLSDYEEDLNKMRGLSKEEFVLLLRRQVNGISRRSSTDKGLLHGQGEPRMAPYVGNIFYPKSSIKCDDGEVENGFKPCSYKGEIIANSSIGIAGTCHNLDLSLGISPSSKKLKQSDCGGGFAFGCMASKVPDERGTMEKDMADRIKHVPSQSFSNVSWQLCSNGTIASGPLLSNAASSGFVSSSSYFITHTSNQHMY* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0933 409 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 399 - -
Apr8g0933 409 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Apr8g0933 409 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Apr8g0933 409 MobiDBLite consensus disorder prediction 31 56 - -
Apr8g0933 409 CDD AP2 156 212 IPR001471 GO:0003700|GO:0006355
Apr8g0933 409 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Apr8g0933 409 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Apr8g0933 409 MobiDBLite consensus disorder prediction 26 56 - -
Apr8g0933 409 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 399 - -
Apr8g0933 409 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0933 Apr-Chr8 10894529 10898727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0933 3 407 AP2-EREBP Transcription Factor Family AT5G60120 34.792 1.38e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g0933 AP2 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0933 K09284 - gmx:100776138 597.045