Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0931 ATGCAACCCATCGCAGGTTCATCTGGTTCATCTACAACTCAGGATTTGAAGGAGGAAGTGGATTCTCGGTCTATCTATGTTGGAAATGTTGACTATGCATGTACATCTGAAGAAATCAGGCGACATTTTCAAGGATGTGGAGCTGTGAACAGAGTGACAATTCTGACGACCATATCTGGTCAACCAAAAGGATTTGCTTATGTTGAGTTTGTTGAGGTTGATGCTGTTCACAATGCTCTCTTTTTAAATGAATCAGAACTGCATGGTCGGAAACTGAAGGTCTGTGCCAAGCGTACAAACATTCCTGGAATGAAACAGTATTCTGGGAGAAGACCTTTTGCTTCAAGATATAGAAGGCCTTCATTCCATCCTCAACCTGGTTATGGAAGGTTTCCAAGGTTTGGCCGACCCATGCAATATTACAGGCCATACTAA 435 0.4253 MQPIAGSSGSSTTQDLKEEVDSRSIYVGNVDYACTSEEIRRHFQGCGAVNRVTILTTISGQPKGFAYVEFVEVDAVHNALFLNESELHGRKLKVCAKRTNIPGMKQYSGRRPFASRYRRPSFHPQPGYGRFPRFGRPMQYYRPY* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0931 144 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 141 - -
Apr8g0931 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 93 IPR000504 GO:0003723
Apr8g0931 144 SUPERFAMILY RNA-binding domain, RBD 18 126 IPR035979 GO:0003676
Apr8g0931 144 SMART rrm1_1 24 95 IPR000504 GO:0003723
Apr8g0931 144 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 141 - -
Apr8g0931 144 Gene3D - 6 133 IPR012677 -
Apr8g0931 144 CDD RRM_II_PABPs 24 95 - -
Apr8g0931 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0931 Apr-Chr8 10846214 10857718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0931 24 95 Eukaryotic Initiation Factors Gene Family AT2G36660 36.709 6.75e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0931 K14396 - vvi:100242522 207.608