Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0922 ATGGATGCTTCAAAATCCTTTGGAAAAAAGCATGAAGAATGGTCCCCTGCTGCACCATCCATTATTTGTCATGAGCCACCTTCTTCATCCTCTTCATATGGCAAGAAATGGAAGGAAGTCCTTGTGAAACGCAGGAAGGTGAAAAAAGCATTGGAGACATTTCATAGTTTGTTTTGCAAACTAATGTGTAAACATAAAGAAGACCAAACTGGGGATTTGAAAGCAAATACAAAAATGCTGATGGAAGCAGCAATGTTGATGAAAAGCAAGCATCAATGGGAGAACACTCAAAAGCGTGTGGGGCATGTAATAGGAATTGATATTGGCGATCAGTTTCAATACAGGGCTGAACTCAATGTCATTGGCCTCCATAGGCAGTTTTCAAGTGGTATTGATTATATGGGAATAGGAAGGAACTCATTGGCCACGAGCATTGTCGTGACTAATCGTTACGATAATGCTAGAAAGTCTAATGGTTCCTTGGTCTACATTGGCCATGGGGGAAATCCTAATGTAAGCAATACTGTTTTGCTTCAAGATCAAAAATTGGAAGGGGGGAATTTGGCTTTGAAGAATAGCATGGATGCTAAAAGTCCTGTGAGGGTTATATTGAAAGTCTGTGGAAAATCTGAGGATATGGTCACTATGGTTAAAAGCAGTTCTCACTGCTCATTTTTTTATGATGGATTGTATTTAGTGGAGAAGATGACACAAGAAAGAGGAAAATTTGGAAAACTTGTGTTCAAGTTTACATTGAATAGAATTTTGGAACAACCTAGAACTTGTGTTGCCATTAAGGATGATATTACGGATGATGATAACAATTCAGGACAATATGCTTGTTTTACTGCAAGAAAGGGACAAAAACCTAGGGCTTGTGGTGTCCAAAAGGATGTTGTTCGGATGAATGATGTTTCAAAAGGGAAAGAAAAGTTTCCTATTCGGATGGTGACATCAATGGATTGTGTTCAGATACCCTCACACTTTGATTACATAGTCAATAACATTTATTCAGAGGGTTTCAAGCAGCCAATTCTATGTGGCTGCGATTGTACAAATGGATGTGTGGACTATGAGAAATGTCCTTGCATTGTTAGGAATGGTGGAAGAATGCCGTATGACTGTAATAAAAGATTTGCTTCTCCTATGAAGTCATCCCTTATATATGAGTGTGGCCCTTCTTGCAACTGTTCCTCATCTTGCATCAACCGTGTCAGTCAGCATGGTATTCAGTTTCAACTAGAAATCTTCATGACAGAATCGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTTCCTCTGGAAGCTTTGTTTGTGAGTACATTGGAGAAGTCCATAACAATAGAGAAGCTGGATCAAGGCCAGATGTTGATGAACACATATTTAAGATGGGTTTTGGCAAGGGCTTCATTGATGCAACAAGGCGTGGAAACATTGGAAGATTTATAAATCATAGTTGTTCTCCTAATCTCTGTGTCAAAGATGTTATGTATGATCACAATGATAAGAGCCTTCCACACAAAATACTTTTTGCTGTGAAGGACATACCTGCTGGTAGAGAGCTGAGCTATGATTATAATGGCTGCAAGGGAAAATTTATCAAGGTTAGGAGCAATATTTGCCACTGTGGATCACGGGAATGCAATGGACAGATCTATGTTTGA 1665 0.3922 MDASKSFGKKHEEWSPAAPSIICHEPPSSSSSYGKKWKEVLVKRRKVKKALETFHSLFCKLMCKHKEDQTGDLKANTKMLMEAAMLMKSKHQWENTQKRVGHVIGIDIGDQFQYRAELNVIGLHRQFSSGIDYMGIGRNSLATSIVVTNRYDNARKSNGSLVYIGHGGNPNVSNTVLLQDQKLEGGNLALKNSMDAKSPVRVILKVCGKSEDMVTMVKSSSHCSFFYDGLYLVEKMTQERGKFGKLVFKFTLNRILEQPRTCVAIKDDITDDDNNSGQYACFTARKGQKPRACGVQKDVVRMNDVSKGKEKFPIRMVTSMDCVQIPSHFDYIVNNIYSEGFKQPILCGCDCTNGCVDYEKCPCIVRNGGRMPYDCNKRFASPMKSSLIYECGPSCNCSSSCINRVSQHGIQFQLEIFMTESKGWGVRTRSFISSGSFVCEYIGEVHNNREAGSRPDVDEHIFKMGFGKGFIDATRRGNIGRFINHSCSPNLCVKDVMYDHNDKSLPHKILFAVKDIPAGRELSYDYNGCKGKFIKVRSNICHCGSRECNGQIYV* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0922 554 Gene3D - 82 274 IPR036987 -
Apr8g0922 554 SUPERFAMILY PUA domain-like 83 263 IPR015947 -
Apr8g0922 554 SMART G9a_1 96 258 IPR003105 -
Apr8g0922 554 ProSiteProfiles YDG domain profile. 101 254 IPR003105 -
Apr8g0922 554 Gene3D SET domain 280 536 IPR046341 -
Apr8g0922 554 SMART preset_2 302 396 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g0922 554 ProSiteProfiles SET domain profile. 412 527 IPR001214 GO:0005515
Apr8g0922 554 Coils Coil 553 554 - -
Apr8g0922 554 Pfam SAD/SRA domain 100 258 IPR003105 -
Apr8g0922 554 ProSiteProfiles Pre-SET domain profile. 347 409 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g0922 554 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE 41 551 - -
Apr8g0922 554 ProSiteProfiles Post-SET domain profile. 537 553 IPR003616 -
Apr8g0922 554 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 41 551 - -
Apr8g0922 554 Pfam Pre-SET motif 306 404 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g0922 554 SMART set_7 412 533 IPR001214 GO:0005515
Apr8g0922 554 SUPERFAMILY SET domain 295 535 IPR046341 -
Apr8g0922 554 Pfam SET domain 423 527 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0922 Apr-Chr8 10452696 10455553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0922 82 552 Su(var)3-9 homologs AT1G73100 34.503 1.31e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr8g0922 SAD_SRA 1.2e-38 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0922 - - gmx:100807574 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0922 8 10452696 10455553 Apr8g0922 8 10452696 10455553 ECH