Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0906 ATGAACAGCACTTCCAATTCTGATGACAACCGTTCAGAGGAGCAGCGTGGATATGCAATTTACTCAGTTGGGTTATCTCTTGCGGTTATCCTAGTGATCACTGCCATAACTCTCATTTCTTATTACTGTAGCCGTAGAAGCTTGCAAAACAGTCAAGTAAGTGCTACTGCCAACACCAGTGTGGAGCTAGATTCTGCCTTAACTATACAAGTTCATCAAGGAGAAGCTGTTGTGAACAGTTATCCAGTGCTATTGTATTCCCAGGCCAAGCAGCATAAGCCTGATACAGAAACAGTAACATCATCGTGCTGCTCAATATGTTTGGCAGATTACAAGGATTCAGACTGGTTGAAACTTCTACCTGATTGTGGTCACTTGTTTCATAGAGATTGCATTGATAGGTGGTTGCAGGTAAACCTCTCATGCCCCATGTGTCGAAATTCGCCACTCCCTACTCCTCTTGCTCAAGTTCCCTTGGCAACAAGACATGATTAG 495 0.4364 MNSTSNSDDNRSEEQRGYAIYSVGLSLAVILVITAITLISYYCSRRSLQNSQVSATANTSVELDSALTIQVHQGEAVVNSYPVLLYSQAKQHKPDTETVTSSCCSICLADYKDSDWLKLLPDCGHLFHRDCIDRWLQVNLSCPMCRNSPLPTPLAQVPLATRHD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0906 164 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 160 IPR045899 -
Apr8g0906 164 SUPERFAMILY RING/U-box 77 149 - -
Apr8g0906 164 Pfam Ring finger domain 104 146 IPR001841 -
Apr8g0906 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 150 IPR013083 -
Apr8g0906 164 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Apr8g0906 164 SMART ring_2 104 145 IPR001841 -
Apr8g0906 164 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 160 - -
Apr8g0906 164 CDD RING-H2_PA-TM-RING 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0906 Apr-Chr8 10024856 10025350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0906 14 160 C3H Transcription Factor Family AT5G06490 36.905 2.60e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0906 - - gmx:102670414 250.751