Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0890 ATGTCTCTTATTACACTTGAACACGCTTTCTCTCATTTACTCGCTCTTGTAGCTTTACTCTCAGTATTTCTAATTGTCCCTTCCTCTTGTTTCAACCCTAGAAAGATTGTTAATGCTTCATACTCCTCAGCTCAGTCAGATTGGTCACCTGCAGTGGCCACTTGGTATGGATCTCCCCAAGGGGATGGAAGTGAAGGTGGTGCTTGTGGATATGGCAGTGCTGTTGGGATACCACCATTCTCATCAATGATATCTGCAGGAGACCCTAATGTATTTAACTCTGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAAGTGTACTGGGAATACTGCATGTTCGGGAAAACCTGTGAGGGTAGTCATTACTGACCAGTGTCCTGAATGTGGCTCTGATGGTAAATATCATTTTGATTTGAGTGGTACTGCTTTTGGGGCCATGGCGATTTCCGGTCAAGATGGAAAACTACGCAATGCTGGAAAAATTGACATTCAACATAGAAGAGTTAAATGCAACTATCCTGGCATGTCAATAGCCTTTCACGTGGACTCTGGATCCAACCAATATTACTTTGCTACCTCAATTGAATATGAGAACGGAGATGGTGACCTTGCAAAGGTCGAACTGAAGGAAGCACTTGACACAACCTCATGGCACTCCATGCAGCAATCATGGGGTGCTGTTTGGAAACTTGACAATGGATCACCACTTCATGCACCCTTCTCTATTAGGTTAACAACCCTTCAGTCTCGCAAGACTATTGTGGCCACCAATGTTATTCCTTTGGGCTGGATGCCAGATCAGACTTACAGATCATTTGTGAATTTTTAA 828 0.4372 MSLITLEHAFSHLLALVALLSVFLIVPSSCFNPRKIVNASYSSAQSDWSPAVATWYGSPQGDGSEGGACGYGSAVGIPPFSSMISAGDPNVFNSGKGCGSCYEVKCTGNTACSGKPVRVVITDQCPECGSDGKYHFDLSGTAFGAMAISGQDGKLRNAGKIDIQHRRVKCNYPGMSIAFHVDSGSNQYYFATSIEYENGDGDLAKVELKEALDTTSWHSMQQSWGAVWKLDNGSPLHAPFSIRLTTLQSRKTIVATNVIPLGWMPDQTYRSFVNF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0890 275 PANTHER EXPANSIN-B3 17 275 - -
Apr8g0890 275 SUPERFAMILY Barwin-like endoglucanases 40 174 IPR036908 -
Apr8g0890 275 SMART dpbb_1 84 165 IPR007112 -
Apr8g0890 275 PANTHER EXPANSIN-B2-RELATED 17 275 - -
Apr8g0890 275 Gene3D - 171 272 IPR036749 -
Apr8g0890 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Apr8g0890 275 Gene3D - 34 170 IPR036908 -
Apr8g0890 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Apr8g0890 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Apr8g0890 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Apr8g0890 275 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Apr8g0890 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Apr8g0890 275 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Apr8g0890 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Apr8g0890 275 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Apr8g0890 275 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Apr8g0890 275 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Apr8g0890 275 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Apr8g0890 275 PRINTS Major pollen allergen Lol pI signature 226 243 IPR005795 GO:0005576|GO:0019953
Apr8g0890 275 SUPERFAMILY PHL pollen allergen 177 271 IPR036749 -
Apr8g0890 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 271 IPR007117 -
Apr8g0890 275 Pfam Lytic transglycolase 85 164 IPR009009 -
Apr8g0890 275 Pfam Expansin C-terminal domain 177 260 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0890 Apr-Chr8 9730621 9733091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0890 30 275 Expansin Gene Family AT1G65680 59.350 4.64e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0890 - - gmx:548090 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1303 4 12194860 12196059 Apr8g0890 8 9730621 9733091 PCT