Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0885 ATGTCCCTCGAAGACTCTCTAAGATCTCTCTCCCTCGACTACCTCAACCTTCTCATCAACGGCCAACAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGTCGTTTGGTTCACGCGCACCGCTGCATCTTGGCCGCGCGTAGCCTCTTCTTCAGGAAATTCTTCTGCGGACCCGACCCCACGGCCGGACTCGACCCCGCCGGAGCATCCCGCGTCAACTCCGGTGCGGCGGCCAGGCCTCCCGGCGTCATCCCTGTGAACTCGGTGGGCTACGAGGTTTTCTTGCTTTTGCTGCAGTTTCTGTACAGTGGACAAGTCTCCATCGTGCCTCAGAAGCACGAGGCTAGGCCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACTCTCGCTGCCGCTAGATACTTCGGCGTCGAACAGCTTGCATTGCTCACTCAGAAACAACTAGCAAGCATGGTAGAGAAGGCCTCAATAGACGATGTGATGAAAGTTCTGATAGCATCAAGAAAGCAAGAAATGCACCAACTGTGGAATACATGCTCCCATCTTGTGGCAAAGTCAGGTCTCCCACCAGAGGTTCTCGCCAAACACCTTCCCATAGACGTAGTCGCAAAAATTGAAGAACTACGTCTCAAATCCTCCCTCGCACGCCGTTCCCTCATGCCCCTTCATCCACACCACCAACATCACGACCTCGTACCCGACCTCGAAGACCACAAAATCCGCCGCATGCGTCGCGCCCTCGACTCCTCGGACGTAGAACTCGTCAAACTCATGGTCATGGGCGAAGGCCTCAACCTCGACGAAGCACTCGCTTTGCACTACGCCGTAGAAAATTGCAGCCGCGAAGTTGTGAAAGCGCTTCTCGAATTAGGCGCCGCAGATGTCAACTTCCCCGCCGGCCCTGCCGGAAAAACGCCGCTCCATGTTGCCGCCGAGATGGTCTCGCCGGAGATGGTGGCGGTGCTGTTGGACCACCACGCCGACCCGAACGTCCGAACCGTCGAAGGTGTCACCCCTTTGGACACCCTCCGAACCCTAACCTCGGATTTCCTCTTCAAAGGCGCTGTCCCCGGTTTAACCCACATTGAACCCAACAAGTTAAGGTTGTGTTTGGAGCTCGTGCAATCCGCGGCTCTTGTTTTGTCGCGCGAAGAAGGAAACAATGCTAGTAACAATAACAATAACAACAACCCTGCTTCCTCAACGGTTATTTACCCGCCATTGAGTGAAGACCATAGCAGCAGTAGCAGCGGGAATAACAACATTGCGAACCTGAATTTGGATTCTAGGTTGGTGTATCTCAACCTTGGTGCCACGCCTCAATTGGGTGATGATGATAACAGCCACAATAGCCAGAGGGAAGCAATGAGCCGTCATGGTTCGCAAGGTGGTGGATGTGACCCAACAATGTATCATCACTCTCATGACTTCTAG 1467 0.5481 MSLEDSLRSLSLDYLNLLINGQQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPTAGLDPAGASRVNSGAAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMHQLWNTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPLHPHHQHHDLVPDLEDHKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVEGVTPLDTLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNASNNNNNNNPASSTVIYPPLSEDHSSSSSGNNNIANLNLDSRLVYLNLGATPQLGDDDNSHNSQREAMSRHGSQGGGCDPTMYHHSHDF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0885 488 SMART BTB_4 26 163 IPR000210 GO:0005515
Apr8g0885 488 CDD BTB_POZ_NPR_plant 8 163 - -
Apr8g0885 488 SUPERFAMILY Ankyrin repeat 272 355 IPR036770 -
Apr8g0885 488 Pfam Domain of unknown function (DUF3420) 198 255 IPR024228 -
Apr8g0885 488 MobiDBLite consensus disorder prediction 397 432 - -
Apr8g0885 488 SMART ANK_2a 313 342 IPR002110 GO:0005515
Apr8g0885 488 SMART ANK_2a 278 308 IPR002110 GO:0005515
Apr8g0885 488 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Apr8g0885 488 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 488 IPR044284 GO:0099402
Apr8g0885 488 PANTHER REGULATORY PROTEIN NPR5 1 488 - -
Apr8g0885 488 Gene3D Potassium Channel Kv1.1; Chain A 3 196 IPR011333 -
Apr8g0885 488 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Apr8g0885 488 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Apr8g0885 488 Pfam BTB/POZ domain 22 112 IPR000210 GO:0005515
Apr8g0885 488 MobiDBLite consensus disorder prediction 449 488 - -
Apr8g0885 488 SUPERFAMILY POZ domain 12 161 IPR011333 -
Apr8g0885 488 ProSiteProfiles BTB domain profile. 26 110 IPR000210 GO:0005515
Apr8g0885 488 Gene3D - 246 361 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0885 Apr-Chr8 9605321 9608579 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr8g0885 BTB 8.6e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0885 K14508 - gmx:100811388 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0885 8 9605321 9608579 Apr8g0885 8 9605321 9608579 ECH
Apr4g1286 4 11871908 11875756 Apr8g0885 8 9605321 9608579 PCT