Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0862 ATGGAAGTGGAGAAGGAAAATACACCCTCAACCTCAACTGTTACTACAGAACCCTCTGTACCTGCCTCTGATGGTCCAAACCCTGTTTCTTCTGCTAGTGCATCTCTTACCCCTCCAATACAACCTGCTATTCCACAAGCTGTTGCTCCTTCTGCTGTACCTACTTTAGCTCCAATTCCTGCAATTCCTCCGCCTCGCCCACTGGCACCACTCCCAGTTCGGCCACCAGTCATTAGGCCTCCTGTACCACAAAATGGCGAGGTTGGATCAAGTGACTCCGATTCAGATAATGATGAATCGAATGCAAGAATCAACCAGGGTGCTGGGGAGTATGAGATATCTGAAGAGAGTAGACTGGTAAGAGAGCGGCAGGAAAAGGCAATGCAGGAACTCATGATGAAGAGGCGTGCTGCTGCTCTTGCTGTCCCTACAAATGATATGGCTGTGCGAGCTCGGCTCCGCCATCTTGGCGAACCAATAACTCTGTTTGGTGAGAGAGAGATGGAGAGGCGGGACAGGTTGAGGATGATAATGGCAAAGCTGGATGCTGAAGGCCAGCTAGAGAAGCTGATGAAAGCTCATGAGGATGAAGAGGCTGCAGCTTCTGTTCCAATGGATGAGGCTGAGGAAGAACTGCAGTATCCATTTTACACTGAAGGGTCAAAGTCTCTTCTGGATGCCAGAATTGATATTGCTAAATATTCTTTGTCGAGGGCGGCATCACGGCTTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGACATGGATGCAGAGATGGATTGGGCATTGAAGCAGGCTGGGAATTTAAGTCTTGAATTCAGTGAAATTGGAGATGATCGGCCGCTTTCTGGTTGCTCCTTCTCAAGAGATGGAAAATGGCTTGCTACCTGTTCTCTGACTGGGGCTGCCAAGATGTGGAGCATGCCCAAAATAAAGAAGTATTCCACTTTTAAGGGGCACACAGAACGTGCTACTGATGTTGCTTATTCTCCTAAGCATAATCATTTAGCAACTGCCTCTGCTGATCGGACAGCAAGGTATTGGAATGATCAAGGATCTCTTTTGAAGACATTTGAGGGTCATCTTGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGTCATAGTAGAAGTGTATATGGTTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATGCTCTGGCTCGTGTTTGGGACCTCCGAACTGGTAGAAGTATTCTTGCATTGGAAGGTCATGTTAAGCCGGTTCTTGGCATCAATTTTTCACCAAATGGATATCATCTAGCCACAGGCGGTGAAGACAATACTTGTCGCATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACAATTCCTGCTCACTCTAATTTAATATCACAAGTTAAATTTGAGCCACAAGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCTAAGGTTTGGTCAGCCCGTGACTTTAAGCCTGTGAAAACACTTTCTGGCCATGAAGCAAAAGTTACTTCTGTGGATGTTCTTGGAGATGGCGGTTATATCGTTACTGTCTCTCATGATCGCACCATAAAGCTGTGGTCTAGTAATATGACTAGTGAAGAAGCTGCTATGGATGTGGACTAA 1725 0.462 MEVEKENTPSTSTVTTEPSVPASDGPNPVSSASASLTPPIQPAIPQAVAPSAVPTLAPIPAIPPPRPLAPLPVRPPVIRPPVPQNGEVGSSDSDSDNDESNARINQGAGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASVPMDEAEEELQYPFYTEGSKSLLDARIDIAKYSLSRAASRLQRAQRRRDDPDEDMDAEMDWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGAAKMWSMPKIKKYSTFKGHTERATDVAYSPKHNHLATASADRTARYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGINFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSVDVLGDGGYIVTVSHDRTIKLWSSNMTSEEAAMDVD* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 397 - -
Apr8g0862 574 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Apr8g0862 574 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Apr8g0862 574 PRINTS G protein beta WD-40 repeat signature 463 477 IPR020472 -
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 444 485 IPR001680 GO:0005515
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 401 IPR001680 GO:0005515
Apr8g0862 574 SUPERFAMILY PRP4-like 127 182 IPR036285 -
Apr8g0862 574 MobiDBLite consensus disorder prediction 1 43 - -
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 444 478 - -
Apr8g0862 574 Gene3D - 119 190 IPR036285 -
Apr8g0862 574 PANTHER BNAC04G01920D PROTEIN 109 566 - -
Apr8g0862 574 ProSitePatterns Trp-Asp (WD) repeats signature. 463 477 IPR019775 -
Apr8g0862 574 Gene3D - 257 442 IPR015943 GO:0005515
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 351 IPR001680 GO:0005515
Apr8g0862 574 Coils Coil 180 200 - -
Apr8g0862 574 ProSitePatterns Trp-Asp (WD) repeats signature. 421 435 IPR019775 -
Apr8g0862 574 MobiDBLite consensus disorder prediction 55 119 - -
Apr8g0862 574 MobiDBLite consensus disorder prediction 1 40 - -
Apr8g0862 574 ProSitePatterns Trp-Asp (WD) repeats signature. 379 393 IPR019775 -
Apr8g0862 574 MobiDBLite consensus disorder prediction 56 82 - -
Apr8g0862 574 PANTHER WD40 REPEAT PROTEIN 109 566 - -
Apr8g0862 574 SMART WD40_4 353 392 IPR001680 GO:0005515
Apr8g0862 574 SMART WD40_4 522 561 IPR001680 GO:0005515
Apr8g0862 574 SMART WD40_4 437 476 IPR001680 GO:0005515
Apr8g0862 574 SMART WD40_4 395 434 IPR001680 GO:0005515
Apr8g0862 574 SMART WD40_4 268 309 IPR001680 GO:0005515
Apr8g0862 574 SMART WD40_4 479 519 IPR001680 GO:0005515
Apr8g0862 574 SMART WD40_4 312 351 IPR001680 GO:0005515
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 561 IPR001680 GO:0005515
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 561 - -
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 528 IPR001680 GO:0005515
Apr8g0862 574 Pfam WD domain, G-beta repeat 442 476 IPR001680 GO:0005515
Apr8g0862 574 Pfam WD domain, G-beta repeat 403 434 IPR001680 GO:0005515
Apr8g0862 574 Pfam WD domain, G-beta repeat 524 561 IPR001680 GO:0005515
Apr8g0862 574 Pfam WD domain, G-beta repeat 354 392 IPR001680 GO:0005515
Apr8g0862 574 Pfam WD domain, G-beta repeat 317 351 IPR001680 GO:0005515
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 351 - -
Apr8g0862 574 Gene3D - 443 571 IPR015943 GO:0005515
Apr8g0862 574 Pfam pre-mRNA processing factor 4 (PRP4) like 149 175 IPR014906 -
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 439 - -
Apr8g0862 574 CDD WD40 283 561 - -
Apr8g0862 574 SUPERFAMILY WD40 repeat-like 274 560 IPR036322 GO:0005515
Apr8g0862 574 SMART pr04_2 144 197 IPR014906 -
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 519 - -
Apr8g0862 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0862 401 572 U-box Gene Family AT2G33340 25.556 6.07e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0862 K12662 - gmx:100788948 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0862 8 9072659 9078683 Apr8g0862 8 9072659 9078683 ECH