Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr8g0859 | ATGGCTGAGTATGATTTAACCCCAAGGATGGCGCCAAATCTGGATAGGCACTTGGTGTTCCCTCTTCTGGAGTTCCTGCAGGAGCGCCAGCTGTACAACGATGATGACATTCTGAAGGCGAAGATTGACCTTCTCAATAACACTAACATGGTTGATTATGCTATGGACATTCACAAGAGCCTCTACCACACTGAGGATGTCCCTCAAGACATGATTGAACGCCGTGCTGAAGTTGTTGCCAGACTCAAGTCACTTGAGGAGGGTGCTGCCCCCCTTGTTGCATTCCTCCAGAATGCTGCTGCTGTCCAGGAATTGAGGGCTGATAAGCAGTATAATCTACAGATGCTCAACGACAGATACCAGATTGGTCCTGCACAAATCGAGGCCTTGTACCAATATGCCAAATTTCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAACCTTATGCACAAATAGTGAAAGGAGTTTAAGTGCATTGTGGGGAAAGCTGGCAGCTGAAATATTGATGCAGAACTGGGACATTGCTCTTGAAGAGCTCAATCGTTTGAAGGAAAGCATCGACTCAAAGAATTTTGCATCTCCTTTGAATCAGGTGCAAAGCCGAATATGGTTGATGCACTGGAGTCTGTTCATCTTTTTCAATCATGACAATGGGAGAACACAGATAATTGATCTGTTTAATCAAGACAAGTATCTAAATGCAATCCAAACCAGTGCTCCACACCTTTTAAGATACTTGGCCACAGCATTCATTGTTAACAAGCGCAGGAGACCTCAATTCAAAGATTTTATAAAAGTTATTCAACAAGAGCAGCATTCATATAAGGACCCCATCACCGAGTTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGAGCACAAAAGAAGATGAGAGAATGCGAAGAAGTCATTCTCAATGATCCTTTCCTTGGCAAACGGGTTGAAGAAAGCAACTTTTCAGCTGTGCCATTGAGGGACGAGTTCCTTGAAAACGCTAGGCTATTTATCTTTGAGACATACTGTAGAATACACCAGCGCATTGACATGAGAGTTCTTGCTGAGAAGTTAAATTTGAATTATGACGAGGCTGAGAGATGGATTGTTAATCTCATCCGTAGCTCGAAGCTTGATGCCAAGATTGATTCTCAAACAGGAACAGTTATCATGGAACCTAATCATCCAAATGTGCATGAGCAGCTGATAGACCATACCAAGGCCCTTAATGGGCGTACTTACAAGTTGGTCAGTCAACTTCTGGAACATGCACAAGCTCAGGCAGCTCGATAA | 1314 | 0.4323 | MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYNDDDILKAKIDLLNNTNMVDYAMDIHKSLYHTEDVPQDMIERRAEVVARLKSLEEGAAPLVAFLQNAAAVQELRADKQYNLQMLNDRYQIGPAQIEALYQYAKFQFECGNYSGAADYLYQYRTLCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKESIDSKNFASPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSAVPLRDEFLENARLFIFETYCRIHQRIDMRVLAEKLNLNYDEAERWIVNLIRSSKLDAKIDSQTGTVIMEPNHPNVHEQLIDHTKALNGRTYKLVSQLLEHAQAQAAR* | 438 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr8g0859 | 437 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 429 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Apr8g0859 | 437 | Gene3D | - | 35 | 433 | - | - | |
| Apr8g0859 | 437 | SMART | eIF3_N_2 | 5 | 137 | IPR019010 | - | |
| Apr8g0859 | 437 | PIRSF | Transl_init_eIF3e | 1 | 437 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Apr8g0859 | 437 | SUPERFAMILY | "Winged helix" DNA-binding domain | 332 | 404 | IPR036390 | - | |
| Apr8g0859 | 437 | ProSiteProfiles | PCI domain profile. | 219 | 403 | IPR000717 | - | |
| Apr8g0859 | 437 | SMART | PINT_4 | 332 | 416 | IPR000717 | - | |
| Apr8g0859 | 437 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 435 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Apr8g0859 | 437 | Pfam | PCI domain | 285 | 399 | IPR000717 | - | |
| Apr8g0859 | 437 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 137 | IPR019010 | - | |
| Apr8g0859 | 437 | Coils | Coil | 421 | 437 | - | - | |
| Apr8g0859 | 437 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 435 | - | - | |
| Apr8g0859 | 437 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 332 | 416 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr8g0859 | Apr-Chr8 | 9049847 | 9054843 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr8g0859 | 4 | 437 | Eukaryotic Initiation Factors Gene Family | AT3G57290 | 86.866 | 0.0 | 801 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr8g0859 | K03250 | - | gmx:100797748 | 843.188 |