Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0855 ATGGATCGTGCAACCAAACCCAACCACTCGTTCTCCTACTCCACTCTCTTCAACCTTGAGCCTTTGATGAATTTTCAACTTCCACACGGGGATGATGATTTTGATTACTATGGGAATAGTAGTCAGGAAGATGAGAGCAGAGGTAGCCATGTAGGTGGTGGGGCAATCGCAAATCACAGTAATGGAAATGTGCGTGCAAAGGAGGTGAATATGTTGAGGAAGAGGGCGTGGTCTCAAAACAGTGATGATGAGGAAAATGGTAGTTTTAATAGGACATACATGACAGAGGAGCGATATCGATCAATGCTCGGAGACCATGTTCAGAAATACAAGAGGAGGTGTAAGGATGTCTTGTCTAATCCTGGTCAATATCGGGTTGCTGCTCCACCGATCAAAAGTAACAATGGTTTAAAAGTTCAAAAGTCAGGGAATGAGTACAGGGGAGCATCGCATGCTGCTGAAAGTACATCAGAATGGTTATATGATTCCACTAATCAGAAACCAGGAAAGCACGGTCAATCAGATTTTGTGCAGCAACACAGCACGGATAGGATTATGTATGAACCTGCTTTTTTAGACATTGGGGATGGTATCACATACAAGATTCCTCCAATTTATGATAAGTTGGCCTCAACACTGAACCTTCCAAGCTTCTCGGATATCCATGTGGAGGAATTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGCAATGATGGCTGCTGATAAAAGGTTTGGGACTGAAAACCGAGCAGGCATGGGGGAACCCCTATGCCAATATGAATCTCTTCAGGCAAGAATAAAGGCCATGTCAGCTTCGATCTTGCCTCATAAATTCAGTCTGAAAGTGCCTGATGTTGGCTTGAATTCATCCATTCCGGAGGGTGCCGCTGGAAGCATAAAGCGATCTATTTTATCTGAGGGTGGTGTATTGCAAGTTTATTATGTTAAGGTTTTGGAAAAAGGTGACACCTATGAGATAATTGAGCGAAGCCTACCGAAGAAGCAAAAGGTAAAGAAAGACCCTGCATTGATGGAGAAGGAAGAAATGGATAGAATGGGAAAGATTTGGATAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACCACTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGTGCTCAGAGTACTGTCAAAGAGAGGTCAAAATGAAAGTTAGTAGATCACTTAAATGGACTAAGGGTGCTACCATTCGTACCCGGAAACTAGCTAGAGACATGTTGCTGTTTTGGAAACGAGTAGATAAGGAGATGATTGAAGTAAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAACAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAGCTTTACCCATGGAAGATGTTAAAACAAATGATCAAGATGCAGTGTTTGACTCTTCAGATGCTGGGCCTAATCAGGAGGAAGATTTTGAAGAGGCTGAATTGAAGAAGGAAGCTATGAAGGCTGCTCAAGAAGCAGTGTCTAAGCAGAGAAGGTTGACTGATGCTTTTGATACTGAATGCTTGAGGTTGCGCCAGGTGGATGAAACTGATTCACTTTCACAGGAAGTTGCAGGAGCAACTAACATTGATTTGCAAACCCCATCAACTATGCCTGTGGCATCCACGGTTCAGACGCCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTGGGAAAAACCATCCAGGCTATGGTTTTTTTGGCCCATTTGGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTTAAAAGACTTCCATATTGGGGAGGGCTTTCTGAACGAACAGTACTTAGGAAAAGTATTAACCCAAAAGATCTTTACCGAAGGGAAGCTAAATTCCACATCCTCATCACAAGCTATCAGCTATTAGTTTCTGATGAGAAGTATTTTCGCCGTGTAAAATGGCAGTACATGGTTTTGGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGGTGGAAGACCCTCCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTTATTATGCCAACTTTATTTGACAGTCATGAGCAGTTTAATGAATGGTTCTCGAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATAGATTGCATTCAATTCTGAAACCTTTCATGCTACGACGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAAGAAAACAGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCTATTAAGAACAAGATATCTCTTGCTGAGCTGTTTGATAGTAATCGTGGGCTCAACGAGAAGAGAATTATGAATTTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCTGAGTTGTTTGAAAGGAACGAAGGAAGCACCTACTTCTATTTTGGAGAGATTCCAAATGCACTTCCACCTCCTCCATTTGGGGAGTTGGAGGATATATACTATCCTGGTGGTCACAACCCCATATCATATCAGATACCAAAACTTGTCTATCAAGAGATTATGCAAAGTTCTGAAACTCTCAGTTTGGGTGTTGGTCATGGTGTCTGCAGAGAATCTTTTCAGAAATGTTTTAATATTTTTAGACCAGAAAATGTTCATCGATCTGTCTTCTCAGATGATATTATTGTTAAAAGTGGAAACTTTGGTTTTACCCATTTGATAGATTTATCTCCCCAAGAGGTGACATTTCTGGCCACTGGTTCTTCGATGGAGCAACTATTATTTTCTATGATGAGATGGGAACATAACTTCCTTGATGAAGTTTTAGACTTTCTTACAGAGAATACAATTGGTGATCCTGAATATAGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTACGCGAATGTTATTGCTGCCATCAAGGTCTCAGACCAAGTTTCTTCAGAGTAGGTTTGCAACTGGGCCCACCAATGCTCCTTTCGAGGCCTTGGTTGTCCCACATCAAGATAGGCTTTTATCCTATGCGAGGCTTCTTCACTCAGCATACACGTATATCCCACCAACTAGAGCTCCCCCAATTGGTGCTCGCTGCTCAGACAGAAACTTCACAAATAAAATGATTGAAGAATTACACGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACGTCTGAATGTAATGGGCCTAGAAAGCCAGATTTTCCTCATCATTTAATTCAAGAGATCGACTCTGAATTACCTATTTCACAGCCTGCACTTCAGTTAACACACAGTATTTTTGGCTCTTCACCACCTATGCGGAATTTTGATCCTGCAAAGTTGCTCACAGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCCTACGGGCAGGGAATCATCGTGTTCTCTTATTTGCCCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATATAAATATTTTAGACTTGATGGGTCATCCACTATTCAGGATCGTAGAGACATGGTCAGAGACTTCCAGAATAGGAGTGATATTTTTGTGTTCTTACTAAGTACAAGAGCTGGCGGATTGGGTATCAACTTGACAGCTGCTGATACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTATGGGTCAGACGAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTAAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGACGATGTTCAATTGCAACAGAAATTAAAGGAAATCCCTCTCCAGGCAAAGGAGAAGCAAAAGAAAAAACCTATGAAGGGTATACGGATAAATGAGGAAGGTGATGCGTCTCTGGAAGATCTAACAAACACTCTAGCACAGAAAACTGCAGATAATGATATTTCCATGGACCCAGAGGGACCGAAGTCTGGTAATAAAAAGAGAAAAGCAGCTTCCGACAAGCAAACTACGAGGCCAAGGAATTCTCAGAAGTTGAAAGCAGTATGCATAGATAACGAGTAGCCTGATGCCCATCTAAATTCTGATCCACTGGGCCAAAAACCAAGACCAAAGAGGGCAGAGAAGAATGTGAAAAAAAGGGTTTTTGCTGGGACAGCTTCCACATTCCCAGGGCGGACCCAATTTCCACCTCTTCAGTTCTGGGGTTCTGAAGCCTTAACAGTTCAACACGCCTTAAGACACAGTGACTTCTCAAAGTAG 4602 0.4168 MDRATKPNHSFSYSTLFNLEPLMNFQLPHGDDDFDYYGNSSQEDESRGSHVGGGAIANHSNGNVRAKEVNMLRKRAWSQNSDDEENGSFNRTYMTEERYRSMLGDHVQKYKRRCKDVLSNPGQYRVAAPPIKSNNGLKVQKSGNEYRGASHAAESTSEWLYDSTNQKPGKHGQSDFVQQHSTDRIMYEPAFLDIGDGITYKIPPIYDKLASTLNLPSFSDIHVEEFYLKGTLDLGSLAAMMAADKRFGTENRAGMGEPLCQYESLQARIKAMSASILPHKFSLKVPDVGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALMEKEEMDRMGKIWINIVRRDIPKHHRNFTTFHRKQLIDAKRCSEYCQREVKMKVSRSLKWTKGATIRTRKLARDMLLFWKRVDKEMIEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEALPMEDVKTNDQDAVFDSSDAGPNQEEDFEEAELKKEAMKAAQEAVSKQRRLTDAFDTECLRLRQVDETDSLSQEVAGATNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTKKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGLNEKRIMNLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNALPPPPFGELEDIYYPGGHNPISYQIPKLVYQEIMQSSETLSLGVGHGVCRESFQKCFNIFRPENVHRSVFSDDIIVKSGNFGFTHLIDLSPQEVTFLATGSSMEQLLFSMMRWEHNFLDEVLDFLTENTIGDPEYSYLEKGKVRAVTRMLLLPSRSQTKFLQSRFATGPTNAPFEALVVPHQDRLLSYARLLHSAYTYIPPTRAPPIGARCSDRNFTNKMIEELHDPWVKRLFVGFARTSECNGPRKPDFPHHLIQEIDSELPISQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQNRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRMGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQAKEKQKKKPMKGIRINEEGDASLEDLTNTLAQKTADNDISMDPEGPKSGNKKRKAASDKQTTRPRNSQKLKAVCIDNE*PDAHLNSDPLGQKPRPKRAEKNVKKRVFAGTASTFPGRTQFPPLQFWGSEALTVQHALRHSDFSK* 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0855 1532 Coils Coil 430 469 - -
Apr8g0855 1532 MobiDBLite consensus disorder prediction 1390 1410 - -
Apr8g0855 1532 Gene3D - 565 846 IPR038718 -
Apr8g0855 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 1385 IPR027417 -
Apr8g0855 1532 SMART ultradead3 589 784 IPR014001 -
Apr8g0855 1532 CDD SF2_C_SNF 1198 1330 - -
Apr8g0855 1532 MobiDBLite consensus disorder prediction 1434 1449 - -
Apr8g0855 1532 Gene3D - 1178 1430 IPR027417 -
Apr8g0855 1532 ProSiteProfiles DBINO domain profile. 358 483 IPR020838 GO:0003677
Apr8g0855 1532 PANTHER HELICASE SRCAP-RELATED 17 1486 - -
Apr8g0855 1532 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1486 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Apr8g0855 1532 SMART helicmild6 1236 1319 IPR001650 -
Apr8g0855 1532 MobiDBLite consensus disorder prediction 1390 1490 - -
Apr8g0855 1532 Pfam DNA-binding domain 354 482 IPR020838 GO:0003677
Apr8g0855 1532 MobiDBLite consensus disorder prediction 34 62 - -
Apr8g0855 1532 Pfam SNF2-related domain 608 894 IPR000330 GO:0005524|GO:0140658
Apr8g0855 1532 MobiDBLite consensus disorder prediction 1411 1425 - -
Apr8g0855 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 821 IPR027417 -
Apr8g0855 1532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1394 IPR001650 -
Apr8g0855 1532 Pfam Helicase conserved C-terminal domain 1210 1319 IPR001650 -
Apr8g0855 1532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 605 776 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0855 Apr-Chr8 8998095 9011182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0855 614 894 RAD5 or RAD16-like Gene Family AT5G43530 29.141 6.31e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr8g0855 SNF2_N 2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0855 K11665 - gmx:100780615 2439.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0855 8 8998095 9011182 Apr8g0855 8 8998095 9011182 ECH