Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0845 ATGGGTAGGGGGAAGATTGAGATAAAAAAGATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGAAATGGGTTGCTGAAGAAAGCCAAAGAGTTGTCTGTTTTGTGTGATGCTGAGGTTGCTGTTATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCTAACACAAGCATGGAGCATACCCTTTCAAGGTACAGCAAAGGCATGGAATCAGATTGTGCAGAGGAACCTATTGATGAGCCCCCAGCAGATGTTATGGAGCCTGATACTAAGCTTCTGAAGGATGAAATAACAAAGCTTCGTTCAGCATATGTGAGAATGATGGGTAAGGAGCTCGATGGATTGAGCCTTAAAGAACTGCAGCACCTAGAAAATCAACTGAGTGAAGGGATACTATCTGTCAAAGACAAGAAGGAACAAGTACTTGTAGAACAGCTTAGGAGGTCCAGGTTACAGGAGCAAAAGACAGTGCTGGAGAATGAAGTTCTGCGCAAACAACTTGAGGAGGTACAAAATAAAACAAAGACACAGTTCCTTCAATTCAATTGTTTGGATAGGACAATTTCCATGAACGGCTCAAAACCCCTTTTCAATTGTGCTTCAGAGGACAACGAAATTTCTGATACTACCTTGCAGTTAGGGTTGTCAACAGATTATGGTCACCAGAGGAAAATATTGAAGACAGAACCTTGCAACGACTCATGGAGTCAAGTGGCTTCTCAGTGA 738 0.4201 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSKGMESDCAEEPIDEPPADVMEPDTKLLKDEITKLRSAYVRMMGKELDGLSLKELQHLENQLSEGILSVKDKKEQVLVEQLRRSRLQEQKTVLENEVLRKQLEEVQNKTKTQFLQFNCLDRTISMNGSKPLFNCASEDNEISDTTLQLGLSTDYGHQRKILKTEPCNDSWSQVASQ* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0845 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Apr8g0845 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr8g0845 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr8g0845 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr8g0845 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr8g0845 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr8g0845 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Apr8g0845 245 PANTHER MADS BOX PROTEIN 1 223 - -
Apr8g0845 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr8g0845 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr8g0845 245 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Apr8g0845 245 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr8g0845 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr8g0845 245 Coils Coil 152 177 - -
Apr8g0845 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0845 Apr-Chr8 8862831 8866110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0845 1 238 MADS-box Gene Family AT5G13790 47.347 6.40e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr8g0845 K-box 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0845 - - gmx:100792278 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0845 8 8862831 8866110 Apr8g0845 8 8862831 8866110 ECH