Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0842 ATGCAAATGGAGGGGGAAAATGATAGAGAGTTGTTGGAATATGTAAGGAAACCCAATACTCCACCACCGTTTTTGTTGAAGACCTATATGTTGGTCGAAGATCCTTCCACCAATGATGTTGTGTCGTGGAATGGTGATGGGACAACGTTCGTGGTGTTGCAACCGGTGGAGTTTGCACGTGATCTACTCCCAACTCTCTTCAAGCATAGCAACTTCTCTAGCTTCGTTCGGCAGCTAAATACCTATGGCTTTCGTAAAGTTGCAACAAATAGATGGGAGTTTTGCAACGAACGATTTAGGAAAGGTGAGAAGGACCTGCTATGCGAGATTCGGCGTAGAAAAGCTTGGGCCAGCAAGCAACAACAACCCACTATTGCACCAAACCAAGCCACACCCCAACAAGATTCTGATGACGATCACAGGTCCTCATCAGCCTCTTCGTGTTCGGGTTATGCCACTCTTGTAGACGAAAACAAGCGACTCAAGAAGCAGAATATGGTGTTGAACTCAGAGCTAAGAATCATGAAGAGGAAGTGTAGGGAACTGCTTGATTTGGTGGTCGAGTATACACATGCAAAAGAAGACGTGGAAGATGAGAGACCCATGTTATTTGGGGTGAGACTCCATCAAGGAGAGAAAGAGTTGAAGAAGAAGAGAGCTGAAATATGTGAAAGCACAAGCACTTTGCTATCCCAGTCATAA 702 0.4516 MQMEGENDRELLEYVRKPNTPPPFLLKTYMLVEDPSTNDVVSWNGDGTTFVVLQPVEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNRWEFCNERFRKGEKDLLCEIRRRKAWASKQQQPTIAPNQATPQQDSDDDHRSSSASSCSGYATLVDENKRLKKQNMVLNSELRIMKRKCRELLDLVVEYTHAKEDVEDERPMLFGVRLHQGEKELKKKRAEICESTSTLLSQS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0842 233 Coils Coil 151 178 - -
Apr8g0842 233 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0842 233 MobiDBLite consensus disorder prediction 118 133 - -
Apr8g0842 233 SUPERFAMILY "Winged helix" DNA-binding domain 19 113 IPR036390 -
Apr8g0842 233 Gene3D - 16 114 IPR036388 -
Apr8g0842 233 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0842 233 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0842 233 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0842 233 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0842 233 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0842 233 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 233 IPR027725 -
Apr8g0842 233 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 7 233 - -
Apr8g0842 233 MobiDBLite consensus disorder prediction 118 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0842 Apr-Chr8 8816990 8820343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0842 21 189 HSF AT2G41690 56.111 2.84e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr8g0842 HSF_DNA-bind 7.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0842 K09419 - qsu:112013936 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0842 8 8816990 8820343 Apr8g0842 8 8816990 8820343 ECH
Apr4g1223 4 10910392 10912698 Apr8g0842 8 8816990 8820343 PCT