Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0828 ATGGGAACTCCAGAATTCCCAGATCTGGGAAAGCACTGTGCTGTCTCTGATTGCAAGCAGATTGATTTCTTGCCCTTCACCTGCGATCGCTGCAACCAGGTGTATTGTTTGGAGCACAGAAGTTACATTAGACATCAGTGTACAAAAGCTGACAAGCTAGATGTCACTGTAGTTATATGTCCCCTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACATGGGAGAATCATGTTAACACTGAGTGCGACCCATCAAATTATGAGAAAGTCACAAAGAAGAAAAAATGTCCTGTTCCTGGATGCAGAGAGATCTTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCAATGTGGACCATTGTTTGAAGCATCGGTTTGGACCTGATCATAAATGCCCCGGGCCTAAAAGGTTGGAAACAAGTTTTTCATTCATGAGTCTTTTGAATAGGAGCAGAAAAGAGGAGCCTAAACCCAATTCAAGTTCAACCTCAACATCATCGAAGTGGACTGCAAGCTTTCTGAATGCAGCTTCTAACATTCGAGCTTCAGCTGAGGCTGGCATGTCAAAGTTGAGTGGTGAAATCAACCAGGCCTGGCAGACATCAAGGGATAGCGCAGGACAGAGCCGTAGCAATGGTCAAGTGGAGCAATGCCCTCAATGTGGTGCGAAGTTTTCCTCGGTTACCACTTTGGTGGACCATGTGCAAAAGGTTCATGAAAGGGGTGGCAACCGATCTGGAGCGAAGGTTACAATTGATGTTTGTCCTAAGTGTAGCAGAGGATTTCGAGACCCTGTTTCACTTGTTGAGCATGTTGAGAGGGATCATGGAGGTAGCTCTAGAGCATAG 864 0.4537 MGTPEFPDLGKHCAVSDCKQIDFLPFTCDRCNQVYCLEHRSYIRHQCTKADKLDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCREILVFSNTIKCRDCNVDHCLKHRFGPDHKCPGPKRLETSFSFMSLLNRSRKEEPKPNSSSTSTSSKWTASFLNAASNIRASAEAGMSKLSGEINQAWQTSRDSAGQSRSNGQVEQCPQCGAKFSSVTTLVDHVQKVHERGGNRSGAKVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0828 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 244 IPR013087 -
Apr8g0828 287 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Apr8g0828 287 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Apr8g0828 287 Gene3D - 86 173 IPR035896 -
Apr8g0828 287 Gene3D - 2 57 IPR035896 -
Apr8g0828 287 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 287 - -
Apr8g0828 287 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
Apr8g0828 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 286 IPR013087 -
Apr8g0828 287 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Apr8g0828 287 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Apr8g0828 287 ProSitePatterns Zinc finger C2H2 type domain signature. 223 244 IPR013087 -
Apr8g0828 287 SUPERFAMILY beta-beta-alpha zinc fingers 222 277 IPR036236 -
Apr8g0828 287 Gene3D Classic Zinc Finger 194 284 - -
Apr8g0828 287 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Apr8g0828 287 SUPERFAMILY AN1-like Zinc finger 55 142 IPR035896 -
Apr8g0828 287 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Apr8g0828 287 Pfam C2H2-type zinc finger 222 244 - -
Apr8g0828 287 ProSitePatterns Zinc finger C2H2 type domain signature. 260 281 IPR013087 -
Apr8g0828 287 SMART c2h2final6 258 281 IPR013087 -
Apr8g0828 287 SMART c2h2final6 221 244 IPR013087 -
Apr8g0828 287 MobiDBLite consensus disorder prediction 154 173 - -
Apr8g0828 287 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0828 Apr-Chr8 8633482 8636221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0828 1 287 C2H2 Transcription Factor Family AT2G41835 65.278 7.15e-133 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0828 zf-AN1 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0828 - - gmx:100786272 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0828 8 8633482 8636221 Apr8g0828 8 8633482 8636221 ECH