Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0825 ATGGGAAACTGTTGCACAACCCCATCAGGAATAAACAAGAAGGGGAAGAAGCAGAAGCAGAAGCAGAATGGGATAGGGAAGAAGTTGGTGGTGCTGCAGAAGCCAACGGGCCATGACATTGGGCTTCGCTATGAGTTGGGCCAAGAATTGGGTCGAGGGGAATTTGGAATAACGTATCTATGCATGGACAGAGAAACGAAGGAGGAGATGGCATGCAAGTCGATTTTGAAAAAGAAGCTCAGAACAGCCATTGATATTGAAGATGTGAGGAGAGAGGTGGAGATCATGAAACACTTACCCAAACACCCCAACATCGTCTCGTTGAAGGACACTTACGAAGACGACAATGCCGTTCACCTCGTCATGGAACTTTGTGAGGGTGGCGAGCTTTTCGACCGCATCGTCGCGCGTGGCCACTACACGGAACGCGCTGCCGCTGTCGTCACCAAAACCATCGTCGAAGTTGTGCAGAATTGCCACAAACATGGTGTGATGCATCGGGATCTCAAACCTGAGAACTTTTTATTTGGAAACAAGAAGGAAACAGCACCTTTGAAAGCTATTGACTTTGGATTGTCAGTTTTCTTTAAACAAGGTGAAAAATTTGATGAAATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATTTGGAGTGCAGGAGTAATTCTTTACATCTTACTTTGTGGTGTTCCGCCATTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATACGATCGGTTGTTGATTTTAAAAGGGAGCCATGGTCAAAGGTTTCTGATAATGCAAAGGACCTTGTGAAGAAGATGCTTGATCCTGACCCACAGAGCCGGCTGACTGCACAACAAGTGTTAGATCATCCATGGCTACAAAATGCAAACAAAGCTCCTAATATTTCATTGGGAGAAGCTGTTAGAGCAAGGCTCATGCAATTTTCTGTGATGAACAAACTCAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCATTTGTCAGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTTGAGCTGATGGACACAAGCAATAAAGGCAAGATTAACATTGATGAGCTACGAGTAGGGTTGCAGAAGCTAGGCCACAATATTCCTGATGGAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTATCTAGATTATGGAGAGTTTCTAGCCATTTGTATTCATTTGAGAAAGAAAGACAATGAGGAGCACCTTCACAAAGCATTCCAATTTTTTGATCAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGCCTTAGCTGATGAGGTTGAAACAAACAATGAAGAAGTTATCAATGCAATTATGCATGATGTGGACACTGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCACGAGAGAGGTTTACTAGTCTAAGTCAAAAATTGATGAAGGACGGCTCATTGCAATTAAACAATGACAAACAATGA 1563 0.4248 MGNCCTTPSGINKKGKKQKQKQNGIGKKLVVLQKPTGHDIGLRYELGQELGRGEFGITYLCMDRETKEEMACKSILKKKLRTAIDIEDVRREVEIMKHLPKHPNIVSLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAVVTKTIVEVVQNCHKHGVMHRDLKPENFLFGNKKETAPLKAIDFGLSVFFKQGEKFDEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKREPWSKVSDNAKDLVKKMLDPDPQSRLTAQQVLDHPWLQNANKAPNISLGEAVRARLMQFSVMNKLKKRALRVIAEHLSVEEVAGIKEGFELMDTSNKGKINIDELRVGLQKLGHNIPDGDVQILMEAGDVDKDGYLDYGEFLAICIHLRKKDNEEHLHKAFQFFDQNQSGYIEIEELHNALADEVETNNEEVINAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFTSLSQKLMKDGSLQLNNDKQ* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0825 520 ProSitePatterns EF-hand calcium-binding domain. 430 442 IPR018247 -
Apr8g0825 520 CDD EFh 421 483 IPR002048 GO:0005509
Apr8g0825 520 Gene3D Phosphorylase Kinase; domain 1 46 129 - -
Apr8g0825 520 Gene3D Transferase(Phosphotransferase) domain 1 130 310 - -
Apr8g0825 520 SMART efh_1 385 413 IPR002048 GO:0005509
Apr8g0825 520 SMART efh_1 349 377 IPR002048 GO:0005509
Apr8g0825 520 SMART efh_1 457 485 IPR002048 GO:0005509
Apr8g0825 520 SMART efh_1 421 449 IPR002048 GO:0005509
Apr8g0825 520 ProSitePatterns Protein kinases ATP-binding region signature. 50 77 IPR017441 GO:0005524
Apr8g0825 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Apr8g0825 520 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 20 499 - -
Apr8g0825 520 ProSiteProfiles EF-hand calcium-binding domain profile. 417 452 IPR002048 GO:0005509
Apr8g0825 520 Pfam Protein kinase domain 44 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0825 520 ProSiteProfiles EF-hand calcium-binding domain profile. 453 488 IPR002048 GO:0005509
Apr8g0825 520 SMART serkin_6 44 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0825 520 SUPERFAMILY EF-hand 331 506 IPR011992 -
Apr8g0825 520 Gene3D - 311 485 - -
Apr8g0825 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 499 - -
Apr8g0825 520 ProSiteProfiles EF-hand calcium-binding domain profile. 345 380 IPR002048 GO:0005509
Apr8g0825 520 Pfam EF-hand domain pair 419 483 IPR002048 GO:0005509
Apr8g0825 520 Pfam EF-hand domain pair 362 407 IPR002048 GO:0005509
Apr8g0825 520 ProSitePatterns EF-hand calcium-binding domain. 394 406 IPR018247 -
Apr8g0825 520 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509
Apr8g0825 520 ProSitePatterns EF-hand calcium-binding domain. 466 478 IPR018247 -
Apr8g0825 520 CDD STKc_CAMK 43 301 - -
Apr8g0825 520 SUPERFAMILY Protein kinase-like (PK-like) 43 311 IPR011009 -
Apr8g0825 520 ProSiteProfiles Protein kinase domain profile. 44 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0825 Apr-Chr8 8602271 8606746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0825 1 518 EF-hand Containing Proteins AT5G19450 76.692 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr8g0825 Pkinase 3.5e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0825 K13412 - gmx:100778471 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0825 8 8602271 8606746 Apr8g0825 8 8602271 8606746 ECH
Apr4g1202 4 10546147 10550599 Apr8g0825 8 8602271 8606746 PCT