Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0816 ATGATGAATCGCTTGACCATTGAGACTGAAGATTCATTTGCAAGTTTGCTTGAGCTTGCAGCTAATAACAATGTTGAAGGTTTCAAACGAATGATTGAGCGGGATCCTTCCTGTGTAGATGAGGTAGGACTATGGTACAGCCATCGGAAGGGATCAAGGCAGATGGTCAATGAGCTCAGAACACCATTGATGGTTGCTGCTACTTATGGCAGCATTGATGTTATTAAACTGATTCTTTCACTTTCGGGTTGTGATATTAATAAACCTTGTGGGCTCGACAAAAGCACTGCCCTTCATTGTGCAGCATCAGGCGGGGCTGAGAATGCTGTAGAGGTTGTTAAACTGCTTCTAGCAGCAGGGGCTGATCAAAATTCTGTGGATGGAAATGGTCATCATCCGATTGATGTCATTGTTGTTCCTCCTAAGCTTGCATCTTTGAAAAATAATCTTGAAGAACTTCTTCAAATTGATGATTCCATTGCGGTGTGTAATCTTAGGGTGACCACGGCTCCATCAAACACATATTCTCCACCTTTGTCTGCTTCACCAGAGAATGGGTCTCCTTCTGCACCAGATTTACTGTTGAAGTTAAAGCTAAATGATGGCCATGTTTCTTCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCGTCCCTTCCTGACATCAAGAATAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAATGTCCTTTTGTTCATCCAGGGGAGAATGCCCGGAGAAGGGATCCGAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCAGCACAATATCGGACTCGTCTTTGCAAGGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCCCACACTGTTGAGGAACTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCACCCCGCTCAAGCACATCTTCTGCTATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACCATTCACTCCACCTATGTCACCCTCTGCTAATGGCATGCAACACTCATCTGTTGCTTGGTCCCAACAAAATGTCCCAGCGTTGCATCTGCCAGGGAGTAGTCTTCATTCCAGTCGTCTGAGATCTTCCCTCAATGCCAGAGATATTCCTTTGGATGACTTTGACTTGTTGCCTGAATATGACGTTCAGCAACAACAGCTCCTTAATGAGTTATCTTACCTCTCTCAACAGTCTAATACTATCAACCGCTCTGGCCGCCTGACCCCTTCAAATCTTGATGATATATTCTCTTCTGAGAGTTCATCCCCTCGATTTTCTGATCCAGCATTGGCTTCAGCTGTTTATTCACCAACACATAAATCGGCTGTCCTTAACCAATTTCAGCAGCAGCAAAGCTTGCTGTCACCTGTGAGCACAAACTTCTCTTCTAAAAATGTTGACAATCCCTTATTGCAGGCCTCTTTTGGGGTTCAAACATCAGGAAGGATGTCTCCACGGAATGTAGAACCTCTTTCTCCAATGAGCTCTAGGATTTCTGTGCTGGCTCAACGTGAGAAGCAGCTACAATTTCGCAGCCTTAGCTCCAGGGAACTTGGCTCCAATTCTACTACTGTTGCTGCTGCTACTGGTTCTCCTATCAATTCTTGGTCAAAGTGGGGACCCTCCAATGGTACATTGGATTGGGCTGTCAATTCAGATCAATTAGGTAAGCTACGTAGATCATCGTCATTTGAGTTTGGGAATAATGAAGAGGAGCCTGATTTGTCATGGGTCCAGTCACTTGTTAAAGAATCTCCATCTGAGGTTAAGGAAAATTTGGCTGTCTCAAATGTTGAAGCAGCTGGATCCTCTGGTGAGGTTTCAAATACGCGTGCACAAATGGAGACTGTTGATCATGCTGTGTTAAGAGCGAGGCTTGAACAAATGAAGCTTGATCATCTTGTGGCTCAGCAAAATTAA 2088 0.4444 MMNRLTIETEDSFASLLELAANNNVEGFKRMIERDPSCVDEVGLWYSHRKGSRQMVNELRTPLMVAATYGSIDVIKLILSLSGCDINKPCGLDKSTALHCAASGGAENAVEVVKLLLAAGADQNSVDGNGHHPIDVIVVPPKLASLKNNLEELLQIDDSIAVCNLRVTTAPSNTYSPPLSASPENGSPSAPDLLLKLKLNDGHVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTVEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMQHSSVAWSQQNVPALHLPGSSLHSSRLRSSLNARDIPLDDFDLLPEYDVQQQQLLNELSYLSQQSNTINRSGRLTPSNLDDIFSSESSSPRFSDPALASAVYSPTHKSAVLNQFQQQQSLLSPVSTNFSSKNVDNPLLQASFGVQTSGRMSPRNVEPLSPMSSRISVLAQREKQLQFRSLSSRELGSNSTTVAAATGSPINSWSKWGPSNGTLDWAVNSDQLGKLRRSSSFEFGNNEEEPDLSWVQSLVKESPSEVKENLAVSNVEAAGSSGEVSNTRAQMETVDHAVLRARLEQMKLDHLVAQQN* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0816 695 SUPERFAMILY Ankyrin repeat 12 138 IPR036770 -
Apr8g0816 695 Gene3D - 2 234 IPR036770 -
Apr8g0816 695 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Apr8g0816 695 Gene3D - 271 334 - -
Apr8g0816 695 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Apr8g0816 695 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Apr8g0816 695 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Apr8g0816 695 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Apr8g0816 695 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Apr8g0816 695 SMART ANK_2a 93 125 IPR002110 GO:0005515
Apr8g0816 695 SMART ANK_2a 58 88 IPR002110 GO:0005515
Apr8g0816 695 SMART ANK_2a 11 40 IPR002110 GO:0005515
Apr8g0816 695 Pfam Ankyrin repeats (3 copies) 20 126 IPR002110 GO:0005515
Apr8g0816 695 PANTHER UNKEMPT FAMILY MEMBER 2 692 IPR045234 -
Apr8g0816 695 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 2 692 - -
Apr8g0816 695 MobiDBLite consensus disorder prediction 174 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0816 Apr-Chr8 8430275 8434443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0816 8 688 C2H2 Transcription Factor Family AT5G12850 53.228 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr8g0816 Ank_2 4.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0816 - - gmx:100813554 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0816 8 8430275 8434443 Apr8g0816 8 8430275 8434443 ECH