Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0805 ATGGCTGACCCTTACTCTAATTTCTTCTCATCAGGTTTCTTCCATTACCCATCTTCAAACCCTTCACCACGCCACCCTTATGTTCACAACTTCATCAACCAAAACACCAACACCAACATCAACAACAACACCTTTTTCCACTACTTCCACCCCCACCACCTTCAAAGCACTATCACCTCTTGTTCTTCTACCTTTTCACCCCCTTCCCCTCCTCTAAGAGAAGCCCTTCCACTTTTGAGTCTTAGCCCAACAAAGCAAGAGGATGAAGAAGAACAAGAGGAGGATCAGTCCATGGATGTGGAAGAGGAGTGTAACAGGATCCTCCATCCCAAAGAGGAAGAACAAGAAGAGGATGATGATAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCCTCAATGCTTTCTTCCACTAACAAAGAACAACAACAAAGTGGTGATGGTAACAATGGTAGTGAGGATTCTTCTTCAGGGTTCTTAGCCAACAGGCTCAACAAGGGGCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACACAATTTTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATACAACAATATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGAATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGATTTTAGAACCCTTCAAACACACTACAAGAGGAAGCATGGTATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGGGGTGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAGGAAGAAGAGCCTGCATCAGAAGTAGAACAAGATAATGATTTCACCCAGTAA 1059 0.4533 MADPYSNFFSSGFFHYPSSNPSPRHPYVHNFINQNTNTNINNNTFFHYFHPHHLQSTITSCSSTFSPPSPPLREALPLLSLSPTKQEDEEEQEEDQSMDVEEECNRILHPKEEEQEEDDDSVTVALHIGLPSPSAAEIASMLSSTNKEQQQSGDGNNGSEDSSSGFLANRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDNDFTQ* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0805 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 295 IPR013087 -
Apr8g0805 352 Gene3D Classic Zinc Finger 252 329 - -
Apr8g0805 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
Apr8g0805 352 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 352 - -
Apr8g0805 352 MobiDBLite consensus disorder prediction 83 102 - -
Apr8g0805 352 PANTHER ZINC FINGER PROTEIN WIP2 1 352 IPR043584 GO:0003700|GO:0010468
Apr8g0805 352 SUPERFAMILY beta-beta-alpha zinc fingers 257 295 IPR036236 -
Apr8g0805 352 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Apr8g0805 352 Gene3D Classic Zinc Finger 190 213 - -
Apr8g0805 352 SMART c2h2final6 191 213 IPR013087 -
Apr8g0805 352 SMART c2h2final6 275 295 IPR013087 -
Apr8g0805 352 MobiDBLite consensus disorder prediction 142 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0805 Apr-Chr8 8233700 8235920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0805 1 349 C2H2 Transcription Factor Family AT3G57670 60.724 2.90e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0805 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0805 - - vra:106771283 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0805 8 8233700 8235920 Apr8g0805 8 8233700 8235920 ECH
Apr8g0805 8 8233700 8235920 Apr2g2342 2 28251326 28253343 ECH
Apr4g1189 4 10378358 10380718 Apr8g0805 8 8233700 8235920 PCT