Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0803 ATGGAGAGTAGTAACAAGATGGAACACTATGAAGTGATAGAGCAAATTGGAAGAGGAAAACTTGGTTCAACCTTTCTTGTTCTGCACAAGACTGAGAAAAAGAGGTATGTGCTGAAGAAGATTCGCCTGCCCAAGCAAGCAGACAAGTCCAAAGTGACAGCGCAACAAGAGATGGACCTGATAGCAAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGCTGGAGAAGGAGGACTATATATGCATTATAACTGGCTATTGCGAAGGAGGTAACATGGCTGATAATATAAAGAAAGCTCGAGGATCTTTTTTCTCTGAGGAGAAAGTCTGCAAATGGATGACTCAATTGTTACTAGCTGTCGACTACCTTCACTCCAATCGGGTGCTCCACAGAGATGTTAAGTGTTCCAACATATTCCTCACCAAAGAAAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTTATTACTGAAGACCTTTCTTCGCCGGTTGTTGGAACTCTAAAGTACATGTGTCCTGAGGTCCTTGCTGGTACACCTTATGGTCATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATCGTTGCACATCAACCGGCATTTCGTGCTCCAGACAGGAATGGACTTATCAACAAGATAAATAGATCTTCCATTTCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCAGCGGATTTATTAAGGCATCCTCATTTACAACCTTTTGTTCTACGCTGTCGTAATGCATCATCTGTTTTTCTACCAGTTCATCTTATAAGTAGTAACTCAAAGGATAAAACAAAAAACAAATCTAGTGGTGGCAATGACCACAGGGACAAAGAAGCTGAACTAGCAGGAATAGTAAATCATTTGGAGCGGGTTTATCCAATTGAGGGAAATGGAGATGTACAGACACGGCAACGGGCTGATGACAGCAAGCTAGCAGTGTCAACAAGCGCAGAAGACAACCCTGAGACTAAAATGGTTGATCCTACCAGCTACACTGTGGAATTTTCTACTAGTATTAGTGGCTCAAAAGATGGTTCAACAACATCTGAATCAACCATTTGCAGTGTGTGCAAGGAAGGAGACTTTAAAAATAGACTTTCAAGAGACACAGCTGACAGCGAGATCACTTCAACAAGTACACTGGATTCTGTGCATGAACAACAAGGATTTGCTGCTGAACATTTTCAGAAGTCATATGCAATTGACATAAATACAGCATTTAAAAATGTTGAAGATACTTTTTCCAACGAAGGTTTCAATAAAGATGAAGCACAGAATGAAGATGCCAAACCAGAGGACTCCAGTAAATCAATTATGTCCAGTGAAGACAGCAACAGTCATGATAAAGATGAGTACGTTGATGAGATCACATCAAAGAGGACACTAGATTCTGTACATGAAGAACTAGGATTTACCGCTGAACATTTTACGGAGTCAGATGTGATTGACACTAATGCAGTGACTACTGAAGTTGAAGATACATTATACAATGATGCTTTTGATCAAGCTGAAGCACAGAGAGAAGATGCCAAACCTGAGGACTCTGGTAACTCAATAAAGTCCAGTGAAAACAGCAGTAGTATTGATAAAGATGGGTTCACTAATGATATCACATCAAAGAGTATGCTAGATGTTGTGCATGAAGAACAAGAGTTTGCTGCTGAAATTTTTCAGGAATCAGATGTGATTGACATAAATGCAGTGACTACAAAAGTTGAAGATAAACTTTGCAATGAAGGTTTTGATAAAGCTAAAGGACCTGAGAGCTCCAGTGAATCAATAATGTCCAATAAAAACAGCAATGGTAATGATAAAGATGGGTCCATTGATGAGATTGGAACAAAGAGAACGCTGGATTCTGTGCATGAATATCAAGGTGCTGCTGAAAAATTTCAGATGTTCGAAGCAATTGACGAAAATGCAGTGAATACAAAAGTACAATTGACTAAAGGATCTGAGAGCTCCAGTGAATCAATAATGTCCAATGAAAACAGCAATGCTAATGATAAAGATGGGTCCATTGATGAGATTGCAACAAAGAGAAAGCTAGATTCTGTGCATGAATATCAAGGTGCTGCTGAACAATTTCAGATGTCTGAAGCAATTGACGAAAATGCAGTGAATACAAAAGTACAATTGACTAAAGGACCTGAGAGCTCCAGTGAATCAATAATGTCCAATGAAAACAGCAATGGTAATGATAAAGATGGGTCCATTGATGAGATTGCAACAAAGAGAACGCTAGATTCTGTGCATGAATATCAAGGTGCTGCTGAACAATTTCAGATGTCTGAAGCAATTGACAAAAATGCAGTGAATACGAAAGTTGAAGATAAACTTTTCAATGAAGGATTTGATGAGGCTCAAGTACATATGGAAAAAGCCAAACCTTTGAGCTCCAATGAATCAATGGTGTCCCTTGAAAACAGCAATGGTAATTATAAAGATGGGTCCATTGATGAGGTCCCATCAAATAAAACACTAGATTCTGTGCATGAAGAGCAAGGACTTACTGCTGAACATTTTCAGACATCCGAAGCAATTGACATAAATGCTGTGAATACAAAAGTTGAAGATATACTTTCCCATGAAGGTTTTGATAAAGCTGAAGCACATAGGAAAGATGCTAAACCTGAAGACTCCAGTAAATCAATGTCCAGTGAAGATAGCAACGATAATAATGAAGTTGGGTCCATAAATGAGGAGCCGATCGTAGATTCTGTTAACATTGAACACCACACTGAAACTAAAAGCTGCTTGAAGGAAAATGAAAATCCTGAAGCTTTTAGAGAAGACTTACACATGGACAGCTCGATTTCTGAGCGTAATGATACACTTCTAGGTGGGAATGAAGGCAGGGAAAACACACACATAATCGGTTGTTCCACACATCAAGATGACAATGCCGTTCTAGTTGATAAGCCACCAAATGGCATTTCAAGTGCACATATATCAGTAAGTGGTGATAAAACAAAGAGTTCGTTGGGTAATTCATGCCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTCGAGTTATGCGCCCAACTACTTAAGCAAGGAAAGCTTGAAGAGCTTGCTGCTGTTCTAAAACCATTTGGAGAAGATGCTGTTTCTGTTTCATCCAGAGAAACAGCAATATGGCTAACAAAAAGCCTCATGACCTCACAAAAGTTTAATTCAGAAACTTAG 3273 0.3923 MESSNKMEHYEVIEQIGRGKLGSTFLVLHKTEKKRYVLKKIRLPKQADKSKVTAQQEMDLIAKLNYPYIVEYKDAWLEKEDYICIITGYCEGGNMADNIKKARGSFFSEEKVCKWMTQLLLAVDYLHSNRVLHRDVKCSNIFLTKENNIRLGDFGLAKLLITEDLSSPVVGTLKYMCPEVLAGTPYGHKSDMWSLGCCMFEIVAHQPAFRAPDRNGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAADLLRHPHLQPFVLRCRNASSVFLPVHLISSNSKDKTKNKSSGGNDHRDKEAELAGIVNHLERVYPIEGNGDVQTRQRADDSKLAVSTSAEDNPETKMVDPTSYTVEFSTSISGSKDGSTTSESTICSVCKEGDFKNRLSRDTADSEITSTSTLDSVHEQQGFAAEHFQKSYAIDINTAFKNVEDTFSNEGFNKDEAQNEDAKPEDSSKSIMSSEDSNSHDKDEYVDEITSKRTLDSVHEELGFTAEHFTESDVIDTNAVTTEVEDTLYNDAFDQAEAQREDAKPEDSGNSIKSSENSSSIDKDGFTNDITSKSMLDVVHEEQEFAAEIFQESDVIDINAVTTKVEDKLCNEGFDKAKGPESSSESIMSNKNSNGNDKDGSIDEIGTKRTLDSVHEYQGAAEKFQMFEAIDENAVNTKVQLTKGSESSSESIMSNENSNANDKDGSIDEIATKRKLDSVHEYQGAAEQFQMSEAIDENAVNTKVQLTKGPESSSESIMSNENSNGNDKDGSIDEIATKRTLDSVHEYQGAAEQFQMSEAIDKNAVNTKVEDKLFNEGFDEAQVHMEKAKPLSSNESMVSLENSNGNYKDGSIDEVPSNKTLDSVHEEQGLTAEHFQTSEAIDINAVNTKVEDILSHEGFDKAEAHRKDAKPEDSSKSMSSEDSNDNNEVGSINEEPIVDSVNIEHHTETKSCLKENENPEAFREDLHMDSSISERNDTLLGGNEGRENTHIIGCSTHQDDNAVLVDKPPNGISSAHISVSGDKTKSSLGNSCQQRADALESLLELCAQLLKQGKLEELAAVLKPFGEDAVSVSSRETAIWLTKSLMTSQKFNSET* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0803 1090 SUPERFAMILY Protein kinase-like (PK-like) 7 289 IPR011009 -
Apr8g0803 1090 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 927 1076 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 671 737 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 591 672 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 791 877 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 510 592 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 4 512 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 736 797 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 872 927 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 822 847 - -
Apr8g0803 1090 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0803 1090 MobiDBLite consensus disorder prediction 735 775 - -
Apr8g0803 1090 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0803 1090 MobiDBLite consensus disorder prediction 893 952 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 607 642 - -
Apr8g0803 1090 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 675 702 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 872 927 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 736 797 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 791 877 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 512 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 671 737 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 591 672 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 510 592 - -
Apr8g0803 1090 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 927 1076 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 335 358 - -
Apr8g0803 1090 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0803 1090 MobiDBLite consensus disorder prediction 827 847 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 675 696 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 532 562 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 617 631 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 321 358 - -
Apr8g0803 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Apr8g0803 1090 MobiDBLite consensus disorder prediction 545 562 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 444 480 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 893 914 - -
Apr8g0803 1090 CDD STKc_Nek 9 264 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 735 761 - -
Apr8g0803 1090 MobiDBLite consensus disorder prediction 934 952 - -
Apr8g0803 1090 Gene3D Transferase(Phosphotransferase) domain 1 92 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0803 Apr-Chr8 8181621 8189607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0803 10 265 MAP Kinase Kinase Kinase AT3G13530 31.128 1.08e-31 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Apr8g0803 Pkinase 4.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0803 K08857 - gmx:100796658 1293.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0803 8 8181621 8189607 Apr8g0803 8 8181621 8189607 ECH
Apr4g1188 4 10347310 10353142 Apr8g0803 8 8181621 8189607 PCT