Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0787 ATGGAACAAACGGCACTCGAATCCATTCACTTCAACGACGAAATTCAGGGAATCATGGCTCCGGCGACGGAAACCGCCAATTCCTTCACCGCGCTTCTCGAGCTCCCACCGACGCAGGCCGTGGAGCTCCTCCACTCGCCGGAGCGTGCCGGAAAACCACCTCGCCACAATCCGATGAGCTCCTTCGCTTCCGGCGGCGGTAACTTGACTTTCCCTTCCAACGCCGCGTTGATCGAACGCGCAGCCAGGTTCTCTGTGTTCGCTGGTGATAACTCGCCGGCGGTAAAGCACGAGCAGCCGGAAACTGATTCCAACCCGAGTTCTACTCAGGGCGGTGGGTGCGTCTCCGATCCCGCGGTTGAGAACAAGAACCCGAAGGGCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCGTCGAAGAAGAGCAAGAGCGTAGCCGACGAAAGCTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGACAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAACGCTCGGATGAAACTTTTACAAGACCTGGTCCCCGGTTGCAATAAGATATCAGGAACGGCATTGGTTTTGGATAAAATTATCAACCATGTGCAATCTCTCCAGCATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTTAACCCAGTAATTGATTTCAACCTTGACAGCTTATTGGGTACTGAAGGAGTGTCTCTAATGGACTGTAACTTCCCTCCCTCAGTTGCACCCGTCATGTGGCCCGAAATCACAGAGAATGGAAGCAGACAACAATATCAGCAACCATGGCAGTTTGATGCATTCCACCAACCCCTTTGGGGGCGGGAAGAAAACAACCCTAATTTCTTGACTCCAGAAAACTCCCTCTTGAGTTATGACTCATCGGCAAATTCAGTAACTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 990 0.5192 MEQTALESIHFNDEIQGIMAPATETANSFTALLELPPTQAVELLHSPERAGKPPRHNPMSSFASGGGNLTFPSNAALIERAARFSVFAGDNSPAVKHEQPETDSNPSSTQGGGCVSDPAVENKNPKGAKRKEREKKVKVSSKKSKSVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQDLVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLGTEGVSLMDCNFPPSVAPVMWPEITENGSRQQYQQPWQFDAFHQPLWGREENNPNFLTPENSLLSYDSSANSVTLHSNQLKMEL* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0787 329 MobiDBLite consensus disorder prediction 139 159 - -
Apr8g0787 329 MobiDBLite consensus disorder prediction 98 115 - -
Apr8g0787 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983
Apr8g0787 329 Gene3D - 166 237 IPR036638 GO:0046983
Apr8g0787 329 MobiDBLite consensus disorder prediction 92 159 - -
Apr8g0787 329 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983
Apr8g0787 329 SMART finulus 175 225 IPR011598 GO:0046983
Apr8g0787 329 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 329 - -
Apr8g0787 329 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 329 IPR024097 GO:0006355
Apr8g0787 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 238 IPR036638 GO:0046983
Apr8g0787 329 CDD bHLH_AtBPE_like 159 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0787 Apr-Chr8 7991987 7997468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0787 2 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.735 2.91e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g0787 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0787 - - aprc:113872810 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0787 8 7991987 7997468 Apr8g0787 8 7991987 7997468 ECH
Apr4g1180 4 10243247 10249558 Apr8g0787 8 7991987 7997468 PCT