Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0783 ATGGATTCCAATACCCATCAAAGTTATCAACTGAACCAACCCTCATCTGGGTTGCTTCGTTTTCGCTCTGCACCAACTTCGCTACTTTCAAATCTCACACCTTCTGTCAGCAGCAACAGTTTCTGGGAAGGTTCTGAATCGGATAAATTGATTTCTAGATTTGTGAGTAGTAGCAACGATACTGTTGCTGTTGCTTCCACTAGCTTTGAAGAGAACAAGGATTGTTCAAAGGCTTTGAGTGTCATGAATTCTCAGGGTTATGGTGTTGGTGGGTTGCCACCTCACTATCCGAGGCATGGTTCTTCTGCTACGGAGGGTTCTTATGGGATGGTAGGGTCAATGGGAATGGATCATGAAACACCCCACAAGGGATTTGGTTCAAGTCTTCTCAGGCAGAATAGTTCCCCTGCTGGTCTTTTCTCCAACATTACCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTTTTGTGGGGTGAATGGAAGTAATGAAGTTAATCCTTGTATTAATAGATTGAATAATCATATTAGCTTCTCTTCAAGAAGTGCTTCTTCCTTGGGAATGTTATCACAAATCTCTGAAATTGGGAGTGAGGAGATTGAGGCAACTAGCCCTGATGATGATAGGAGACAAAGAGGTAGCAATGGTGATGGTCAACATTATGGCCATGGATTCCCCTATGGTTCTTGGAATGACACTCCACAACTCTCAGAAAATCTCAGTGGCTTGAAAAGAGGGAGAACTGGCAATGAAAAGATATTTTCTGATATTCAGAATGAAGAGCAAGGAAACCAAGTTAATATATTATCTCATCACTTGAGTTTACCTAAAGCTTCAGCTGATATGATTACTATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATTAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGAAGTATTGCTGAAAGGGAGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTTCCTAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTAGTGAAAAACGGGCAAACTGCAAATGTATAAACTTGCAAAAGGCAGATACACATCAAATTGCTTGA 1158 0.4111 MDSNTHQSYQLNQPSSGLLRFRSAPTSLLSNLTPSVSSNSFWEGSESDKLISRFVSSSNDTVAVASTSFEENKDCSKALSVMNSQGYGVGGLPPHYPRHGSSATEGSYGMVGSMGMDHETPHKGFGSSLLRQNSSPAGLFSNITFQNGFATMKGVGNFCGVNGSNEVNPCINRLNNHISFSSRSASSLGMLSQISEIGSEEIEATSPDDDRRQRGSNGDGQHYGHGFPYGSWNDTPQLSENLSGLKRGRTGNEKIFSDIQNEEQGNQVNILSHHLSLPKASADMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERERRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCINLQKADTHQIA* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0783 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 371 IPR036638 GO:0046983
Apr8g0783 385 Gene3D - 308 379 IPR036638 GO:0046983
Apr8g0783 385 MobiDBLite consensus disorder prediction 199 231 - -
Apr8g0783 385 MobiDBLite consensus disorder prediction 204 218 - -
Apr8g0783 385 Pfam Helix-loop-helix DNA-binding domain 312 358 IPR011598 GO:0046983
Apr8g0783 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 357 IPR011598 GO:0046983
Apr8g0783 385 SMART finulus 313 363 IPR011598 GO:0046983
Apr8g0783 385 PANTHER TRANSCRIPTION FACTOR BHLH130 10 377 - -
Apr8g0783 385 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 377 - -
Apr8g0783 385 CDD bHLH_AtbHLH_like 312 365 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0783 Apr-Chr8 7920221 7924048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0783 1 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.438 1.67e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g0783 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0783 - - gmx:100819605 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0783 8 7920221 7924048 Apr8g0783 8 7920221 7924048 ECH
Apr8g0783 8 7920221 7924048 Apr2g2352 2 28331348 28334497 ECH
Apr4g1179 4 10210833 10214980 Apr8g0783 8 7920221 7924048 PCT