Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0761 ATGGCGTCTAAAGGTCCCAGGTCCAAGATTGATCATGAGACCAGAGCTAAACGGCAAAAGGCTCTTGAAGCTCCTAGGGAGCCCCGGCGACCCAAAACTCACTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAAAGCTAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCGATAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAAATGGAACTTGATGAAAAGAAGAAAAAGGCCCTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGGTACTCAACAATGTTGGCAGAAAATCTTGTGGATGCTTATAAATCAGCGGAGAAAATTTCTGTGGAGCATCACTTGAGCATTCAAGACAAAAATATAGATGGAGACATTATTAATGAACCTAAGGAAGAGGATCAGTCAGATGCAGCTGACAATGATGAGGAATATGGTGTGCAATCTGATGATGAATCGGAGGATGATGAGCGAACCCTTGAGCAAGATGAGGCTCTAATAACTAAAGAAGAAAGGCAAGAGGAATTGGCCGCTTTGCATGATGAAATGGATCTTCCAATTGAGGAGTTACTCAAGCGTTATGCTGAGGAGAAAGGAGAATCAATAATGCAAGAAAGTAGTCCAGAACATGATGAAGATGATGGGAAAATTGTTAGAGCTGGTGATGGTGATAATAAGGAAGGACTAGCATCAGAAAATGGACATGATCTTTTATCTGACAGCAAAATTGGTGGAAGCAACTCAAGCATGGTCCCTGGTCGACGTTGTGATGAAAGTAATGGCGATGTAGCTACACCAACAGACAATCCATCTCAGTATGAGCATCGCCAAACTGAAAGTCCAAAAGAGTTTCCCAGTGAAACAGTCAATGAAGATTTTGCATATGATTTTACTGATGAAGAGGAAGACGGCGATTTTTTGCTTGGCACAGAAGATAAGGATGATGAAGCAACCTTATCTGAGGAGGAAAAATTGGAAAGAGTTGATGCAATTGATCCTAAGGATGAGATTGCATTATTACAAAAGGAGAGTGATATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAAGGACCCAACCGATCATGATGATGGGGAAGATGAATCTGATTATGCTTCTGCTTTATCGGAGGACCGTTTGGATTCTCCAGTCCCTGAAGATGCTGAGCAGAAGGATCCTGCTGTTCCTATGGATGAAGATGTCAAATCTGGTGAGCACCTCACTGCTGTACCGTCCCAGGCAGAAGAACAATGTGAATCACCTAATGAAAATTTGGAAAAAAGAGAGAGCGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAATACATTTTCCACAACTCAAGTGCGTACAAAGTTCCCTTTTCTACTCAAGAATTCTCTTCGAGAGTACCAACATATTGGATTGGATTGGCTAGTCACAATGTATGAGAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGGTTAGGAAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAAGGGCATTTGGGGCCCACATCTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACAGAGTTTCTAAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGAGAAAACATAAGAGGCAAGGATGGTTGAAACCAAACTCTTTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTAATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTAAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACACCCCTACAAAATGATCTCATGGAACTGTGGTCTCTCATGCATTTTTTGATGCCCCATGTTTTCCAGTCGCATCAAGAGTTCAAGGATTGGTTTAGTAATCCTATAACAGGGATGGTAGAAGGAGAAGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCGTTCTTACTCCGTCGATTAAAGCGAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGACTATCAAAGAGACAGCGTAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTCTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCAATTGTCAGTTCTTTTGATATGGGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCATGCTCTTGCCTGGTCCTTTTTCAACAGTGGACCTAAGAGGTTTAGGTCTTATATTTACTCATCTTGATTATAGCATGACTGCTTGGGAGAGTGATGAAGTGCAAGCTATTGAGACGCCTGCAGCTTTAATCATGGAACATGTTGATATGGCTGACCTAGAAGTAATTAGGCCTGGACTGAGTTGCCAAAAGAAGCTGCAAGGATCTAACATTTTTGAAGAGATTCAAAAGGCTATCTGGGAAGAGAGGCTTAGGCAGACAAAGGAACATGCAGCAGCCATGGCATGGTGGAACTCCTTGAGATGTAAAAAAAGGCCCATGTACTCAACAACTCTAAGGAATCTTGTTACCATAAGGCATCCTGTATATGATATTCATCAGGCGAAAGCAAACCCTGTTTCGTACTTGTACTCATCCAAGCTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAGGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCCGCACGAGCACCCTCTCCTGTTTGCTGGTGCAGTACAAATGAGACAAATGTGTTTCTGCACCCATCTTACAAGCAGGAATGCTCTGAAGTTCTGTTGCCACTACTGTCACCAATCAGGCCTGCGATTGTTCGTCGGCAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAGCTGCAGGAGCTAGCAGTTTTGTTGAGAAGATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACAAAGATGCTTGACATATTGGAGGCATTTATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGGCAGACCTTAATGCAACGTTTTAACACTAACCCCAAATTTTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATATTTTATGATAGTGACTGGAATCCTGCTATGGACCAACAAGCACAAGATCGGTGCCATAGAATTGGTCAGACACGAGAAGTTCATATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAAAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATGCCAAAGGAGAAAACTCAGAACAATGGGGAAGTTTCAGTAACTAATGCAGATGTAGAAGCTGCATTGAAATGTGTAGAAGATGAAGCAGATTATATGGCATTGAAGAGAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGCAAATGAGGATGATGAACCTGCAGAATTAGGTGAATCTGTTTCCAATTTGAATAAAGAAAATGCGTTAATGTTAAATGGATCTGATCCTAAGGAAGATAGACCACCACTCACTGTTTCTGTCAAAGAAGATGATGTTGACATGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCTGCCTTTGAGAATGAGCTACGTCCTATTGACCGATATGCCATTCGTTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAAGAAATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACTATGGCATATCGACAGCAAGTTGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAGTATGAAGCTAAACAGAAAGAAGCTGAGGATGAAATCTGTGATTCTAAAAAGACTCAAACACCAGGTGATTCAAAGCCCAAACATAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAAATTCTGGCTTGAGACCTGTGAAAGAAGAACCACAAGCAGAGCCAATGACTATAGATGATGAGGTTCTCACTAATTTGGATTTTGTGTCAACAAATTCACCTATGCAGAAAAAACGTAAGAAGTCTAAATTAACAATGGATGGTGTAGAAGAAAAGAGACTCAAGAAGTCCAAAAAGACCAAGAGGGATCATCATGATATTTATGCTTCTGATTTAGAGTCCAACTCATTAGTTGTGCAGGATGAACATGGAGAATCAAAGATGTGTGAAAGTCTTGTTGACTTGGAACAGAAAACAAGCCGGAGTAAGATAGGAGGAAAAATATCCATCACTCAGATTCCTGGGAAAAGGATATGGACAATAAAACCAGAAAAATTGAAGAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCTACTGATTTTTGGCTGCCTCAGGAGGATGTAATATTATGTGCAGTTGTCCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACACTTTATGGCATGACTGCTGGTGGGGCATACAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAACTTTTCCAAAAATATGTCTTGTACTCAATGGACAATGCAAATCATGAGAAAATCAACAGTACAGGTTCCGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGCTACTGTTAGATGTTGCTTCTGAGCACGTAAATAGAGAGTTACTATTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAGATGGCATCACATGTTGACCGCAGGCAAAATCCATCGGCCACCTGTAATGGTCTCTACTTCGATCAGAGTTTCTTTACTTCTATTGGCCAACGTTCACAAAATTCCTTGAAGAAACCCTCTGAAAGGATGACATTTGCTAATTTGGCCCAGAACAAGAAATTAATAGCAGCTGCACTTGATGACAGCAGAAGTAAGCAAGAGAATGACAAAACCATCCTCTCTAATCAAGAGGAAGACATGTCAGTGAGTGCGGAACAGCTGGATATAACTTTGGAGTTCCTGAAAGAGGATAGTGACACACTATCTTCATTTCCATCTGTTATAAATTTATCAATACATGGGATTGAATCATCATCGCCTGTAAATAAGCAAACAGAAGATGATCATCTTAAAGTTTGTTCTTCCAGTGCTGAAAATCGATTCAGGTATGCTGAATACAAGGAGGCAGCAAGAGCTTGTGAAGAAGACAGTTCTGGATGGGCTTCATCAGCATTTCCAACGAACGATACAAGGGCTCGACCTGGATCCAGGGTACAGTCCTTTGGAAAGCAAAAGTCTTCTGTATCTGACTCTGCTAAGCCTTCTAGGTCAAAGGCCAAAAGAGCTGCATTAGATCCTAGTGAAATGCATCACCATCAGGCCGAATCATTATTTCAGTCAACAACCCCGCTTAAGGATCTGAAATTTGATCTCACTTCATCCACTCCGGATGAAGCTGGAATTGATGGTATCGATTCCAATTTTTCCTTTGATTTGAATGAGGGAAATTCTTTGGAAATGGAGAGTTTTGGTGTGGTCCCTCATGATTATATAGCTGGTTTAATCTCAGACCTTGATGATTGTACAGCATTCCCCGAATATACAGACATTAGATAA 6165 0.4063 MASKGPRSKIDHETRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALKASKGMLDQATRGEKKMKEEEQRLRKVAINISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAYKSAEKISVEHHLSIQDKNIDGDIINEPKEEDQSDAADNDEEYGVQSDDESEDDERTLEQDEALITKEERQEELAALHDEMDLPIEELLKRYAEEKGESIMQESSPEHDEDDGKIVRAGDGDNKEGLASENGHDLLSDSKIGGSNSSMVPGRRCDESNGDVATPTDNPSQYEHRQTESPKEFPSETVNEDFAYDFTDEEEDGDFLLGTEDKDDEATLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKKDPTDHDDGEDESDYASALSEDRLDSPVPEDAEQKDPAVPMDEDVKSGEHLTAVPSQAEEQCESPNENLEKRESEHIIADAAAAARSAQPTGNTFSTTQVRTKFPFLLKNSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPITGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMGGIDIQLSSSVCSMLLPGPFSTVDLRGLGLIFTHLDYSMTAWESDEVQAIETPAALIMEHVDMADLEVIRPGLSCQKKLQGSNIFEEIQKAIWEERLRQTKEHAAAMAWWNSLRCKKRPMYSTTLRNLVTIRHPVYDIHQAKANPVSYLYSSKLADIVLSPVERFQRMTDVVESFMFAIPAARAPSPVCWCSTNETNVFLHPSYKQECSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKTQNNGEVSVTNADVEAALKCVEDEADYMALKRVELEEAVDNQEFTEEAIGRLEEDEYANEDDEPAELGESVSNLNKENALMLNGSDPKEDRPPLTVSVKEDDVDMLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEAKQKEAEDEICDSKKTQTPGDSKPKHKKKPKKAKFKSLKKGSLNSGLRPVKEEPQAEPMTIDDEVLTNLDFVSTNSPMQKKRKKSKLTMDGVEEKRLKKSKKTKRDHHDIYASDLESNSLVVQDEHGESKMCESLVDLEQKTSRSKIGGKISITQIPGKRIWTIKPEKLKKGNHWSKDCIPSTDFWLPQEDVILCAVVHEYGPNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLYSMDNANHEKINSTGSGKALLKVTEDNIRLLLDVASEHVNRELLLQKHFFALLSSVWKMASHVDRRQNPSATCNGLYFDQSFFTSIGQRSQNSLKKPSERMTFANLAQNKKLIAAALDDSRSKQENDKTILSNQEEDMSVSAEQLDITLEFLKEDSDTLSSFPSVINLSIHGIESSSPVNKQTEDDHLKVCSSSAENRFRYAEYKEAARACEEDSSGWASSAFPTNDTRARPGSRVQSFGKQKSSVSDSAKPSRSKAKRAALDPSEMHHHQAESLFQSTTPLKDLKFDLTSSTPDEAGIDGIDSNFSFDLNEGNSLEMESFGVVPHDYIAGLISDLDDCTAFPEYTDIR* 2055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1466 1481 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1534 1571 - -
Apr8g0761 2054 Gene3D - 487 763 IPR038718 -
Apr8g0761 2054 SMART bromneu2 23 94 IPR014012 -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 185 211 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 290 304 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1957 1975 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 370 413 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1 33 - -
Apr8g0761 2054 Coils Coil 1400 1420 - -
Apr8g0761 2054 CDD DEXQc_SRCAP 518 740 - -
Apr8g0761 2054 PANTHER HELICASE SRCAP-RELATED 3 1954 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 212 283 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1466 1519 - -
Apr8g0761 2054 Gene3D - 1642 1704 - -
Apr8g0761 2054 ProSiteProfiles Myb-like domain profile. 1647 1700 IPR001005 -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 343 369 - -
Apr8g0761 2054 CDD SF2_C_SNF 1048 1183 - -
Apr8g0761 2054 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Apr8g0761 2054 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 530 695 IPR014001 -
Apr8g0761 2054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 740 IPR027417 -
Apr8g0761 2054 Pfam HSA domain 27 93 IPR014012 -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1923 1956 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 169 451 - -
Apr8g0761 2054 Gene3D - 1030 1277 IPR027417 -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1544 1560 - -
Apr8g0761 2054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 1250 IPR027417 -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1292 1311 - -
Apr8g0761 2054 Coils Coil 1276 1296 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1482 1499 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 422 451 - -
Apr8g0761 2054 Gene3D - 764 823 - -
Apr8g0761 2054 Pfam SNF2-related domain 535 807 IPR000330 GO:0005524|GO:0140658
Apr8g0761 2054 Pfam Helicase conserved C-terminal domain 1061 1172 IPR001650 -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 169 184 - -
Apr8g0761 2054 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1063 1213 IPR001650 -
Apr8g0761 2054 SMART ultradead3 514 707 IPR014001 -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1920 1980 - -
Apr8g0761 2054 MobiDBLite consensus disorder prediction 1294 1308 - -
Apr8g0761 2054 SMART helicmild6 1089 1172 IPR001650 -
Apr8g0761 2054 PANTHER HELICASE SRCAP 3 1954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0761 Apr-Chr8 7598181 7615037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0761 538 810 RAD5 or RAD16-like Gene Family AT5G43530 30.435 1.04e-28 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr8g0761 SNF2_N 2.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0761 - - aprc:113871102 3997.2