Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0760 ATGGATTTCCGCAAGCGAGGAAGACCCGAAGCTGCCGTTAACCTTAATGGCACCGTTAAGAAGACCAAATTAGAAATGGAGTCGTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGGTGCCCATTTGGTGAGAGCTGCCACTTCTTGCATTATGTTCCTGGCGGTTATAATGCTGTTGCCCAGATGATGAATCTAAAACCTGTTGCACCTCCACCATCGAGGAATATTGCAGCCCCACCACCTGTCCCTAATGGTTCTGCACTGTCTGCTGTTAAAACCCGCATATGTAACAAGTTCAATACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCCCCATCAATTGATGACCATCGTCCTTTGGGTCCTACAGCAGCCAGTCGTATGTCTGGTCGAGTTGAGGCTCCTCCTGGTCTGGCTGCTAGCTTTGGTGCCAATTCTACTGCGAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCAAAACTTTCAATACGAGAGCATGAATCTGATCCAAATCTCAGAAACATCGAACTTGAGGGAAGCTTTGAACAGATTAAGGAAGCAAGTAACATGGTAAAGGAATTACTTTTGACTATATCAATGTCTGCCCCACCTAAATCCACTCCAGGTATTCCTGGGGCCCCTGCGCCCCCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCGAAAGGATCTTGCACCTTTGGAGAGAGATGCCACTTTGCACATGGAGCTGCTGAATTGCGCAAGCCGGGGGTTTGCTGA 891 0.4804 MDFRKRGRPEAAVNLNGTVKKTKLEMESLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLKPVAPPPSRNIAAPPPVPNGSALSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPLGPTAASRMSGRVEAPPGLAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTISMSAPPKSTPGIPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRKPGVC* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0760 296 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Apr8g0760 296 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Apr8g0760 296 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Apr8g0760 296 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Apr8g0760 296 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Apr8g0760 296 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 294 - -
Apr8g0760 296 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 294 - -
Apr8g0760 296 SUPERFAMILY CCCH zinc finger 261 292 IPR036855 GO:0046872
Apr8g0760 296 Pfam KH domain 171 234 IPR004088 GO:0003723
Apr8g0760 296 SUPERFAMILY CCCH zinc finger 99 130 IPR036855 GO:0046872
Apr8g0760 296 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Apr8g0760 296 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Apr8g0760 296 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Apr8g0760 296 SMART kh_6 167 237 IPR004087 GO:0003676
Apr8g0760 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Apr8g0760 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Apr8g0760 296 CDD KH-I 170 233 - -
Apr8g0760 296 Gene3D - 96 131 - -
Apr8g0760 296 Gene3D - 260 292 - -
Apr8g0760 296 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Apr8g0760 296 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Apr8g0760 296 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 238 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0760 Apr-Chr8 7583999 7589895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0760 35 134 C3H Transcription Factor Family AT1G68200 26.000 2.28e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr8g0760 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0760 - - gmx:100817463 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0760 8 7583999 7589895 Apr8g0760 8 7583999 7589895 ECH
Apr4g1150 4 9804806 9807836 Apr8g0760 8 7583999 7589895 PCT