Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0748 ATGGAGTTGGCTTTGAGCTTAGGAGACACGTCAAAGGCTTTCACTTTTCTTGATAAGGCAACAAATTTAGGGTCCAAAGACCCACCTGGGTTCTGCATAGCACCCAGTTTCACTGCAGGGAAAGCCTCAGAAGACAAAAGAAGCGATGATGAAAGAAGGGGTTCCTCAGATCCACCTGTTCAACTCAACCTTCTTCCTTTCACTCCCGTTCTAAGATCCCAACCTTCTTCCTCTCACCTTCCCATTCCTTGGCTCACTCAAGCATGCGGGTCGGCGAGGGTGTTGGACGTGAACCTTTTTCCGGGGGCCGGGGCGGCGGAAGACGGCGACGAGGGGACGTCGCTGTCGTCACCTAACAGTGCGGTGTCACCGTTTCAGATGGATTTCAGTATGAGGAATGGTAATGTGGAGTTTGGAGGGAGAAACAGGAGAGAGCAAGAGGGTGAGGGCGAGAGAGCGAGTTCTAGAGCGAGTGATGACGACGAGAACGCTTCAACTCGCAAGAAACTCAGACTCTCAAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAGAAACTTGCTTTGGCGAAGCAATTGAATCTTCGTCCTCGTCAAGTGGAAGTATGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACGGAAGTGGATTGTGAGTATTTAAAGCGATGCTGTGAGACCCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTACAAGAATTAAGAGCCTTAAAAACTTCTCAGCCATTCTACATGCAGCTTCCAGCTACCACACTCACCATGTGTCCCTCTTGTGAAAGGGTGGCCACTAATTCCTGCACTGCAACCACAACCACCACCGTTAACAATGGTTCTCAAATCCCGACAGAGTTATCTCTTAGTAAGCCCAGAACATTGCCCTTCTCTAATGGCCAGGCCCAAGTACATCAGGCCCAGGCCCATCACATGGCCTCTTCATGA 996 0.493 MELALSLGDTSKAFTFLDKATNLGSKDPPGFCIAPSFTAGKASEDKRSDDERRGSSDPPVQLNLLPFTPVLRSQPSSSHLPIPWLTQACGSARVLDVNLFPGAGAAEDGDEGTSLSSPNSAVSPFQMDFSMRNGNVEFGGRNRREQEGEGERASSRASDDDENASTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSCTATTTTTVNNGSQIPTELSLSKPRTLPFSNGQAQVHQAQAHHMASS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0748 331 SUPERFAMILY Homeodomain-like 159 224 IPR009057 -
Apr8g0748 331 MobiDBLite consensus disorder prediction 138 170 - -
Apr8g0748 331 SMART halz 223 266 IPR003106 GO:0006355|GO:0043565
Apr8g0748 331 MobiDBLite consensus disorder prediction 106 170 - -
Apr8g0748 331 Pfam Homeobox associated leucine zipper 223 257 IPR003106 GO:0006355|GO:0043565
Apr8g0748 331 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Apr8g0748 331 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Apr8g0748 331 Gene3D - 171 221 - -
Apr8g0748 331 SMART HOX_1 165 227 IPR001356 GO:0003677
Apr8g0748 331 MobiDBLite consensus disorder prediction 34 67 - -
Apr8g0748 331 Pfam Homeodomain 167 221 IPR001356 GO:0003677
Apr8g0748 331 Coils Coil 229 259 - -
Apr8g0748 331 CDD homeodomain 167 224 IPR001356 GO:0003677
Apr8g0748 331 PANTHER - 1 299 - -
Apr8g0748 331 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 299 - -
Apr8g0748 331 MobiDBLite consensus disorder prediction 112 130 - -
Apr8g0748 331 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0748 Apr-Chr8 7350984 7353262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0748 140 318 Homeobox Transcription Factor Family AT4G37790 61.538 1.25e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr8g0748 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0748 K09338 - gmx:100779138 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0748 8 7350984 7353262 Apr8g0748 8 7350984 7353262 ECH
Apr4g1134 4 9664994 9666525 Apr8g0748 8 7350984 7353262 PCT