Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0746 ATGGCTCCTGGAGGAAGTTCTTTCAAAGAAGCTCTTGAAACTCCCCTGATGTTTTCCAATTATGATACCGCTAAGGCAAAATCTGAGGTCAATGGAAATAAAACATTCACAAAATCTAGGATCGGGTTGAGTGGGAAGAGTGGAATTAATTCAAAGAATGCTGTCTGTGACTTACTTGAGTGCACTGTTTGCAAGAATATGATGTATCCCCCAATTCATCAGTGCCCAAATGGCCACACGTTATGTTCAAATTGTAAGGCTGCAGTGCGTAACAGTTGTCCAACATGTAGCCACGATCTTGGAAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCCGAATCCTTGGAGCTTCCTTGCAGATATCAAAATCTAGGTTGTCATGATATATTTCCATACTACACTAAACCTAAGCATGAGAAAAATTGTCGATTTCGTCCATACCATTGCCCCTATGCTGGATCAGAGTGCTGTGTAACGGGTGATGTTCCAACACTTATTGTGCATCTCAAGGATGATCACAAGGTTGACATGCATGACGGATGCACCTTCAACCATCGATATGTCAAAACAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACCGTTTTCAGGTGTTTTGGGAGGCATTTCTGCTTGCACTTTGAGGCGTTTCTGCTAGGCACAGCTCCAGTTTTCATGGCGTTCTTACGGTTTTTGGGCAACGAGGAGGAGGCAAAGAAGTTCAGATACAGCTTGGAGGTTGGTGCAAATAGCCGAAAACTTACATGGCAAGGAATTCCAAGGAGCATTCGTGACAGTCATAGTAAAGTTCGTGACAGTCAAGATGGACTTATCATTCAGAGGAACCTTGCTCTTTATTTTTCTGGTGGCGACAGACAACAGTTGAAGTTGAGGATCACTGGTCGTATTTGGAAAGAAGATTGA 930 0.429 MAPGGSSFKEALETPLMFSNYDTAKAKSEVNGNKTFTKSRIGLSGKSGINSKNAVCDLLECTVCKNMMYPPIHQCPNGHTLCSNCKAAVRNSCPTCSHDLGNIRCLALEKVAESLELPCRYQNLGCHDIFPYYTKPKHEKNCRFRPYHCPYAGSECCVTGDVPTLIVHLKDDHKVDMHDGCTFNHRYVKTNPHEVENATWMLTVFRCFGRHFCLHFEAFLLGTAPVFMAFLRFLGNEEEAKKFRYSLEVGANSRKLTWQGIPRSIRDSHSKVRDSQDGLIIQRNLALYFSGGDRQQLKLRITGRIWKED* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0746 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Apr8g0746 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 168 IPR013083 -
Apr8g0746 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Apr8g0746 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 308 - -
Apr8g0746 309 CDD RING-HC_SIAHs 59 97 - -
Apr8g0746 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Apr8g0746 309 SUPERFAMILY TRAF domain-like 114 305 - -
Apr8g0746 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 302 IPR008974 GO:0005515
Apr8g0746 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0746 Apr-Chr8 7314336 7319010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0746 1 309 C3H Transcription Factor Family AT2G41980 76.052 2.64e-179 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0746 K04506 - gmx:100813966 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0746 8 7314336 7319010 Apr8g0746 8 7314336 7319010 ECH