Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0737 ATGAGAACTTCATGGGCGGATTCTGCTGACAATTCAGCCAATGGTTCTGCCAATACCAATGCCTCGGCTGGCCCTCCCCGGTCAGCATATGTCCCTCCGCATCTTCGCAATAAGACATTGTCCTCCGAGGTTCCAGTGGCATCACACTCGTCTTCTTTGCCAGCTAATGACAGCCGTGCAAATTACGGTGGTCCTGCTCCTCATGGGGGCAGTTCCTTTAAGCCTGATCTCGGACGGCAAGGATATGGTTCTGGTTTTCAGACTGGTGGTGGCTGGAATAGTAGAGGGGCAGGGAGGGACCGTGGGAGGCGTGAGGTGAACCCTTTTGAGAATGATGAAGCTGCTGATCAATCTTTTAGTGAGCAAGAGAACACGGGCATTAACTTTGACGCCTATGATGATATCCCTGTGGAGACTAGTGGAGAGAATGTACCACCACCTGTGAATACATTTGCTGAAATAGATTTGGGCGAGGCATTGAATCAAAATATACAGAGATGCAAGTATGTCAAGCCAACCCCAGTTCAGAGGTATGCCATACCAATATCTCTTTCAGGGAGAGATTTGATGGCCTGTGCTCAGACAGGATCAGGAAAGACAGCTGCTTTTTGCTTCCCTATTATAAGTGGAATCATGCGGATGCAGTATGTTCAAAGACCACGTGTAGCACGAACTGCTTTTCCTCTGGCACTTATCCTCTCCCCTACACGGGAGCTTTCATGTCAGATACATGATGAGGCCAGAAAGTTTTCTTATCAAACTGGTGTCAAAGTGGTAGTTGCTTATGGAGGAGCACCAATCACCCAACAGTTACGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCTACTCCAGGAAGATTGGTAGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGCTGGTAAAGTATTTGGCTCTTGATGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCTCAAATAAGAAAAATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTATTTAGTGCCACATTTCCCAAAGAAATACAGAGACTTGCATCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGAGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCATCTAATGGACCTTCTTCATGCTCAGAGGGAAAATGGAATTTATGGCAAGCAAGGTCTTACATTGGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAACTAGCATTCATGGTGACAGGACACAACAAGAAAGAGAGCTAGCATTGAGGTCATTCAAGAGTGGAAACACACCAATTCTTGTGGCAACGGATGTTGCGGCACGTGGTCTTGACATCCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACGGGGAGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAATAATGTGTCGTTGGCTAAACCATTGGCTGATCTGATGCAAGAGTCAAATCAAGAAGTACCTGCCTGGCTCACCCGTTATGCAGCAAGGGCGTCTTACGGTGGTGGCAACAGAAATAGGAGGTCAGGGGGAGCCCGATTTGGTGGCCGCGATTTTAGGAAAGAAACATTTAATAAAGGAACAGATTACTATGGTGGAACCGGTGGATATGGCAGTTATGGTGGAGGATATGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1803 0.462 MRTSWADSADNSANGSANTNASAGPPRSAYVPPHLRNKTLSSEVPVASHSSSLPANDSRANYGGPAPHGGSSFKPDLGRQGYGSGFQTGGGWNSRGAGRDRGRREVNPFENDEAADQSFSEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMRMQYVQRPRVARTAFPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQLVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNVSLAKPLADLMQESNQEVPAWLTRYAARASYGGGNRNRRSGGARFGGRDFRKETFNKGTDYYGGTGGYGSYGGGYGQGVTSAWD* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0737 600 MobiDBLite consensus disorder prediction 97 111 - -
Apr8g0737 600 MobiDBLite consensus disorder prediction 1 25 - -
Apr8g0737 600 Pfam Helicase conserved C-terminal domain 389 503 IPR001650 -
Apr8g0737 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 364 IPR014001 -
Apr8g0737 600 Pfam DEAD/DEAH box helicase 173 353 IPR011545 GO:0003676|GO:0005524
Apr8g0737 600 Gene3D - 104 366 IPR027417 -
Apr8g0737 600 SMART helicmild6 422 503 IPR001650 -
Apr8g0737 600 MobiDBLite consensus disorder prediction 41 58 - -
Apr8g0737 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Apr8g0737 600 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 43 575 - -
Apr8g0737 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 542 IPR001650 -
Apr8g0737 600 CDD SF2_C_DEAD 376 512 - -
Apr8g0737 600 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 575 - -
Apr8g0737 600 MobiDBLite consensus disorder prediction 1 122 - -
Apr8g0737 600 CDD DEADc_DDX3_DDX4 150 370 IPR044763 GO:0003724|GO:0005524
Apr8g0737 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 519 IPR027417 -
Apr8g0737 600 Gene3D - 367 547 IPR027417 -
Apr8g0737 600 SMART ultradead3 168 379 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0737 Apr-Chr8 7110259 7116707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0737 147 535 Eukaryotic Initiation Factors Gene Family AT3G19760 31.378 8.67e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0737 K11594 - gmx:100818326 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0737 8 7110259 7116707 Apr8g0737 8 7110259 7116707 ECH