Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0732 ATGAGGGGAAGAAGCTACAGCTACAGCCCGTCACCTCCGAGGCGTCACAGCCGAAGAAGGCGCAGTCCTAGCCCTAGGGGTCGTTATGGAGGTCGTGGTAGGGATTTGCCAACGAGTCTTCTGGTTCGGAACCTCCACAGAGATTGCAGGCCAGAAGATTTGCATGGCCCATTTGGTCAATTTGGTCCTCTCAAGGATGTTTACCTGCCGCGAGATTATTATACTGGGCACCCAAGAGGTTTTGGGTTTGTTCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAGTATCACATGGATGGTCAAATTCTTCTTGGTCGGGAGTTGATTGTGGTCTTTGCTGAAGAAAACAGAAAGAAGCCTGCTGAAATGAGAGCAAGAGAACATCGGAGGGGTCGATCCTATGATTATAGGAGATCTCCACTTCGTCTTTCTCGATCCCCACGCTATGCACGAACCTATTCACCTAGTCCAGACTATTCACCTTCCCCAAGACGGAGGAGATATTACAGGTCAATCTCACCAAGAGACAGAAACTTTAGGGAGCGATCATACTCTCGATCTCGATCACCTTATAGGTCGAGAAGCCGCAGCAGAAGTAGGAGTTACAGCAGGAGCATGAGCCAAAGTCCGGGGTACTCTAGGTGA 648 0.4985 MRGRSYSYSPSPPRRHSRRRRSPSPRGRYGGRGRDLPTSLLVRNLHRDCRPEDLHGPFGQFGPLKDVYLPRDYYTGHPRGFGFVQYVDPADAADAKYHMDGQILLGRELIVVFAEENRKKPAEMRAREHRRGRSYDYRRSPLRLSRSPRYARTYSPSPDYSPSPRRRRYYRSISPRDRNFRERSYSRSRSPYRSRSRSRSRSYSRSMSQSPGYSR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0732 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Apr8g0732 215 MobiDBLite consensus disorder prediction 120 215 - -
Apr8g0732 215 MobiDBLite consensus disorder prediction 13 27 - -
Apr8g0732 215 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 213 - -
Apr8g0732 215 MobiDBLite consensus disorder prediction 1 37 - -
Apr8g0732 215 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 213 - -
Apr8g0732 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Apr8g0732 215 SUPERFAMILY RNA-binding domain, RBD 38 139 IPR035979 GO:0003676
Apr8g0732 215 MobiDBLite consensus disorder prediction 173 189 - -
Apr8g0732 215 MobiDBLite consensus disorder prediction 201 215 - -
Apr8g0732 215 MobiDBLite consensus disorder prediction 120 143 - -
Apr8g0732 215 Gene3D - 2 140 IPR012677 -
Apr8g0732 215 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0732 Apr-Chr8 7054559 7056843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0732 38 157 Eukaryotic Initiation Factors Gene Family AT4G34110 25.833 5.33e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0732 K12900 - jre:108985117 223.016