Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0729 ATGTCTTCTAAATTTTGGACCCAGGGTGGTAGTGACTCTGAGGAGGAGAGTGACTATGATGATGAGATTGAGACTACTGTGGGGGAATCTGCTAGCGAAGCTGTTACTAGCAGATACTTGAGGGATAATGCTAGTGACAGTGATGACTCTGATGGCCAAAGGCGTGTTGTGAGGTCAGCAAAAGACAAACGGTTTGGGGAGATGTCTTCAACTGTTAATCAAATGAAGAATGCAATAAAGATTAATGATTGGGTGAGCTTGCAAGAAAGCTTTGACAAGATCAACAAGCAACTCGAGAAAGTGATGCGTGTTATTGAATCTGAGAAAGTGCCGAGTCTTTATATAAAGGCAATTGTGATATTGGAGGACTTCTTAGCTCAGGCTTTGTCAAATAAGGATGCCAAAAAGAAAATGAGTAGTAGCAATGCTAAAGCCCTGAACTCAATGAAGCAGAAATTGAAGAAAAATAATAAGCAATATGAGGACTTGATCATTAAATTTAGGGAGAATCCTGAGAGTGAGGAGGAAAAAGATGAAGAGGAAACAGAAGAAGAGTATGAATCTGAAGATGAAATTATTGAACCAGAGCAGCTAAAAGCTACAGGAGCAAAATCAGATTCTGAAGGTTCTCGCTATGAAGATGAGAAGCAAGATAGCAGCGAAACACCCTGGGACCAAAAGCTTAGCAAGAAAGACAGACTTTTGGATAGACAATTTATGAAAGACCCTAGAGAGATCACTTGGGACGCAGTTAACAAGAAATTCAAAGAGGTTGTAGCAGCTAGGGGTAGGAAGGGAACAGGAAGATTCGAACTGGTTGAGCAGCTTTCCTTCTTAACAAAAGTTGCAAAAACACCTTCACAGAAACTGGAAATTCTTTTCAGTGTGATTTCTGCTCAGTTTGATGTTAATCCTGGTCTTAGTGGCCACATGCCTATAAATGTGTGGAAAAAATGTGTGCAGAACATGCTAGTCATTCTTGATATTCTAGTGCAGTACCCAAACATAGTGGTTGATGATTCAGTGGAACCTGATGAGAAGGAAACTCAAAAAGGGTCAGACCACAGTGGACCAATTCGGGTTTGGGGTAACTTAGTTGCATTCATAGAAAGAATAGATTCTGAGTTTTTCAAGAGTCTCCAGTGCATAGATCCTCACACTCGTGAATATGTTGAGAGACTGAGGGATGAGCCCATGTTTCTTGTCCTTGCTGAGAATGTTCAGGAATATCTTGAAAGCATTGGAAATTTCAAAGCAGCTTCTAAGGTGGCCTTAAGGAGGGTAGAACTTGTTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTAGCTGAGATGACTCAAGATGAGGATAATGGAGATGACCCTAAAGGATTTGAAGAAACAAGGATACCAACAGCATTTGTTGTTACTCCTTCACTTGTGTCACGGAAACCCACCTTTCCTGAGAATAGTAGGACCCTAATGGATATATTGGTATCCTTTATATACAAATATGGAGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTTGCTGATGAGTTCAGTGTAGCACGTGATTTGCTGCTTATGAGCCATTTGCAAGATAGTGTTCAACTCATGGACATTTCAACACAGATACTTTTTAACAGAGCTATGGCACAACTGGGTCTGTGTGCTTTTCGGGTTGGGCTCATTTCTGAGTCACATGGTTGTCTCACTGAACTTTATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAAAATCGTTATCATGAGAAGACCCCAGAACAAGAAAGGTTGGAAAGAAGGCGTCAAATGCCATATCATATGCACATAAATCTCGACCTCCTCGAAGCAGTGCATCTTATATGTGCTATGTTGCTTCAAGTCCCTAACATTGCAGCCAATGCCCATGATGCAAAACGCAAGATCATCAGCAAGAATTTCTGCCGCTTACTTGAAGTTAGCCAGAAACAAACATTCACTGGTCCTCCTGAAAATGTGAGAGATCATGTTATGGCTGCCACAAAGGTTCTTCTTAGCAAGGGAGACTTCAACAAAGCTTTTGATATCATTGGATCTATCCATGTATGGAAATTCGTCAGAAATAGCGATAAAGTGCTTGAAATGCTAAAGGGCAAAATCAAGCAAGAGGCACTGAGGACTTACCTCTTTACCTTTTCCTCGTCTTATGATTCTTTGAGGTTGGATCATCTCACAAAAATGTTTGATCTTTCTGTTGCTGAAACACATAGCATAGTTAGCAGAATGATGATGAACGAAGAGCTTGATGCTAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAGATGTTGGGCATTCTAGAGTGCAGGCTTTGGCATTCGACTTGACAGAGAAATTATGTATCCTTGCAGAGAGCAATGAGAGAGCAACAGAGACAAGAACAGGAATGGCACAGGACCATGTTTCTGCTGCAGTTGTTTCAGGTAATAGGTGGCAAGAGTTGTCATATTCTCAGTCAAGGAAAAGCAGAACTGGGAGGGGTGGTGGAAGGGCATTGGCATTTGGGCAAGGCACTGGAAGTGGGTATTCGAGGGAGCGAACAGGTTCAGGCCATCAGAGATCACGTTATAAAGGTGCTTCTGCGTTGAGGGGATCTCAGGCGGAGGTATCTTCTCGCATGGTTAGCCTTAAGGGAGTTCGTTCTTAA 2715 0.421 MSSKFWTQGGSDSEEESDYDDEIETTVGESASEAVTSRYLRDNASDSDDSDGQRRVVRSAKDKRFGEMSSTVNQMKNAIKINDWVSLQESFDKINKQLEKVMRVIESEKVPSLYIKAIVILEDFLAQALSNKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLIIKFRENPESEEEKDEEETEEEYESEDEIIEPEQLKATGAKSDSEGSRYEDEKQDSSETPWDQKLSKKDRLLDRQFMKDPREITWDAVNKKFKEVVAARGRKGTGRFELVEQLSFLTKVAKTPSQKLEILFSVISAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQYPNIVVDDSVEPDEKETQKGSDHSGPIRVWGNLVAFIERIDSEFFKSLQCIDPHTREYVERLRDEPMFLVLAENVQEYLESIGNFKAASKVALRRVELVYYKPQEVYDAMRKLAEMTQDEDNGDDPKGFEETRIPTAFVVTPSLVSRKPTFPENSRTLMDILVSFIYKYGDERTKARAMLCDIYHHALADEFSVARDLLLMSHLQDSVQLMDISTQILFNRAMAQLGLCAFRVGLISESHGCLTELYSGGRVKELLAQGVSQNRYHEKTPEQERLERRRQMPYHMHINLDLLEAVHLICAMLLQVPNIAANAHDAKRKIISKNFCRLLEVSQKQTFTGPPENVRDHVMAATKVLLSKGDFNKAFDIIGSIHVWKFVRNSDKVLEMLKGKIKQEALRTYLFTFSSSYDSLRLDHLTKMFDLSVAETHSIVSRMMMNEELDASWDQPTGCIVFQDVGHSRVQALAFDLTEKLCILAESNERATETRTGMAQDHVSAAVVSGNRWQELSYSQSRKSRTGRGGGRALAFGQGTGSGYSRERTGSGHQRSRYKGASALRGSQAEVSSRMVSLKGVRS* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0729 904 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 879 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr8g0729 904 MobiDBLite consensus disorder prediction 133 152 - -
Apr8g0729 904 Pfam PCI domain 655 784 IPR000717 -
Apr8g0729 904 MobiDBLite consensus disorder prediction 13 27 - -
Apr8g0729 904 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 901 - -
Apr8g0729 904 MobiDBLite consensus disorder prediction 1 69 - -
Apr8g0729 904 MobiDBLite consensus disorder prediction 42 65 - -
Apr8g0729 904 ProSiteProfiles PCI domain profile. 615 788 IPR000717 -
Apr8g0729 904 MobiDBLite consensus disorder prediction 166 228 - -
Apr8g0729 904 MobiDBLite consensus disorder prediction 839 904 - -
Apr8g0729 904 MobiDBLite consensus disorder prediction 174 192 - -
Apr8g0729 904 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 42 647 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr8g0729 904 Coils Coil 143 170 - -
Apr8g0729 904 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 717 803 - -
Apr8g0729 904 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 901 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Apr8g0729 904 SUPERFAMILY "Winged helix" DNA-binding domain 712 787 IPR036390 -
Apr8g0729 904 SMART PINT_4 717 803 IPR000717 -
Apr8g0729 904 MobiDBLite consensus disorder prediction 132 152 - -
Apr8g0729 904 Gene3D - 728 791 IPR036388 -
Apr8g0729 904 MobiDBLite consensus disorder prediction 206 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0729 Apr-Chr8 7013826 7016644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0729 1 904 Eukaryotic Initiation Factors Gene Family AT3G56150 65.368 0.0 1142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0729 K03252 - gmx:100781967 1370.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0729 8 7013826 7016644 Apr8g0729 8 7013826 7016644 ECH