Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0708 ATGGAGGTTCCAGAGATGGAAGGCAAGAGTGAAAGTCATATGACATCAGCGGCAGCCTTTGTAGAAGGGGGGATTCAAGAAGCCTGTGATGATGCTTGCAGCATTTGCCTTGAGGACTTTTGCAAAAGTGATCCTGCAACGGTCACTAATTGCAACCATGAGTTCCACTTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATCAGCTTGAAGGATGCTACCAGTCAAGAATTGCTTGAGGCAGTAGAGCTGGAGAGGAGCTTGAGGGATAACTCATCAAGAGATGCTGCAATTTTTCATCATCCGACACTTGGGAATTTCGAGTTGCAGCATTTACCAATGGGTGTAAATGAGGCTGATATTGAAGAGCGAATACTTCAACATTTAGCTGCTGCCGCAGCAATGAGGAGAGCACACCACCTTGGTAGGAGGGAAGGTCAAAGAACTAGGCCATCTGCTCACGGCCGTCCGCACTTCTTAGTATTTCCTACTCAGCCTAGTGCACCTCCATCAGCTGCAATTCCTGTAGGAACCCCATGTACCCCACTTACATTTGATGGAGATGATCAACCATCACCACCACATCAGATCCCACAGTTTCAAACTCAGACTTCTTTAACTCCTGGCTCCACTGTCAGGGCAACAAATCTTCAAGGAATTCTCTCTAATGATAGAAGGTCTACCTCTCTTCCTTTACCTGTGAATCAAGATAGAGCACAGCCATCAGAACAATCATTCTCTGATTCTCTGCGTTCTAGACTTAATGCAGTATCCATGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCCATGTCAGAACTTGGTTCAGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTATCACGATTTATGGAGCGCCTTGAAACAAGGGAAAATAATAGAGCTGCAGGTACTTCTTTGTCAGACCATTTGGTGAATCATTCTATTGCAGAGACAAGTAACCAAAATAATGTGGAAGCGCGCGGAAAGAACTCTTTGCATGACAACAATACTCCAGCTACATATTCAGCTAGCTCAGATTCAAAATGA 1119 0.4459 MEVPEMEGKSESHMTSAAAFVEGGIQEACDDACSICLEDFCKSDPATVTNCNHEFHLQCILEWCQRSSQCPMCWQPISLKDATSQELLEAVELERSLRDNSSRDAAIFHHPTLGNFELQHLPMGVNEADIEERILQHLAAAAAMRRAHHLGRREGQRTRPSAHGRPHFLVFPTQPSAPPSAAIPVGTPCTPLTFDGDDQPSPPHQIPQFQTQTSLTPGSTVRATNLQGILSNDRRSTSLPLPVNQDRAQPSEQSFSDSLRSRLNAVSMRYKESISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRFMERLETRENNRAAGTSLSDHLVNHSIAETSNQNNVEARGKNSLHDNNTPATYSASSDSK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0708 372 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 371 - -
Apr8g0708 372 SUPERFAMILY RING/U-box 25 80 - -
Apr8g0708 372 Pfam Ring finger domain 32 73 IPR001841 -
Apr8g0708 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 371 - -
Apr8g0708 372 MobiDBLite consensus disorder prediction 146 258 - -
Apr8g0708 372 MobiDBLite consensus disorder prediction 341 372 - -
Apr8g0708 372 MobiDBLite consensus disorder prediction 203 258 - -
Apr8g0708 372 SMART ring_2 33 73 IPR001841 -
Apr8g0708 372 Coils Coil 300 320 - -
Apr8g0708 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 90 IPR013083 -
Apr8g0708 372 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0708 Apr-Chr8 6803002 6808178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0708 30 81 C3H Transcription Factor Family AT4G00335 46.154 6.72e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0708 K19043 - gmx:100803582 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0708 8 6803002 6808178 Apr8g0708 8 6803002 6808178 ECH
Apr4g0404 4 3444209 3456652 Apr8g0708 8 6803002 6808178 PCT