Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0691 ATGTCGAGCTCAAATGATGTTGTTAAGAAAACTAAGGGTCGACAAAAGGTTGAGATGAAGAAAATGAGCAACGAGAGAAACCTTCAAGCCACATTCTCAAAACGACGTAGTGGGATTTTCAAGAAAGCGAGTGAACTTTGCACCCTTTGCAATGTCGACATTGCTGTTGTTGTCTTCTCACCCGCTCACAAAGCCTACTCCTTTGGAAGCCCTAACGTTGATGCTGTCATCCAACGTTATCTCACGTGGGCCCCACCACCACCGCAAACCTTGCAAAACATGATTGAGGCCCACCGCAGCAGCAATGCGCGTGACCTCAACGCGCAGCTCGCTCGTCTCGCCAACCAGCTTGAAGCTGAGAAGAACCGTGGAGAAGAGCTAAGTGATTCATTGAAGGCATCACAAGCCCAATGGTGGTGGGCTTCTCCCATTGAAGACATGAATAGGGCCCAACTCGAATGGTTGAAAGGGTCGTTGGAGGAGCTAAAGAAACATGTCACTCACAAAGCTCAAACCCTCCTCATTCAAAGTGCTAATTTTAATAATAATAATTCAATTAATCATCTTTTCTCTGGGAACTCCTTTTTGGATGTTAATAACAATTTGCATCCACCATCTTTGCTTCAGAACAATTATGTCTTTGATGGGAACATGATGCACCATCATCACTTTAACAACATTGGAGGATATGGACCTTATGCTGCTGATGCTGGATTCAATGGATCCACTCAGAACATGCCATCTCTTGATGATACACTATTTATGTAA 768 0.4427 MSSSNDVVKKTKGRQKVEMKKMSNERNLQATFSKRRSGIFKKASELCTLCNVDIAVVVFSPAHKAYSFGSPNVDAVIQRYLTWAPPPPQTLQNMIEAHRSSNARDLNAQLARLANQLEAEKNRGEELSDSLKASQAQWWWASPIEDMNRAQLEWLKGSLEELKKHVTHKAQTLLIQSANFNNNNSINHLFSGNSFLDVNNNLHPPSLLQNNYVFDGNMMHHHHFNNIGGYGPYAADAGFNGSTQNMPSLDDTLFM* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0691 255 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 11 193 - -
Apr8g0691 255 CDD MADS_MEF2_like 13 82 IPR033896 GO:0000977|GO:0045944
Apr8g0691 255 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Apr8g0691 255 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Apr8g0691 255 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Apr8g0691 255 SUPERFAMILY SRF-like 13 87 IPR036879 GO:0003677|GO:0046983
Apr8g0691 255 Coils Coil 100 137 - -
Apr8g0691 255 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Apr8g0691 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Apr8g0691 255 Gene3D - 24 95 IPR036879 GO:0003677|GO:0046983
Apr8g0691 255 Gene3D - 96 190 - -
Apr8g0691 255 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Apr8g0691 255 PANTHER MADS BOX PROTEIN 11 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0691 Apr-Chr8 6574578 6575345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0691 7 174 Type I MADS-box Gene Family AT5G60440 52.632 1.00e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr8g0691 SRF-TF 4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0691 - - aprc:113871381 497.278