Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0688 ATGGCGATGCAAACGGTTTATTTGAAAGAACATGAAGGGGTTGTCCACAATTCTGTTGGACAGTTATCATCTGCAACTTCAGCTCCATGGTGGAGTGCCTTTGGATCTCAATCAGTTTGTGGGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCCAACTATGTAGACCAATTGGCCACCGGCAAGCAATCAGCACGAGGCGTTGAACAATTGTTGGATAGAGGACATACAACCCAGTTTACTATCTTTCCAGATGATGCACAAAGTCCTCAGGCAACCTTATCACTGCAGTCATCACTTGCTGAGCCCCGCAATCGTTTTGAGCATGGGTTTAATCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTATGGGCTCATCTCAACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCATTTAACTTGACATATGATGATGGACCAACTTACGTAAATGCTAAGCAGTACCACGGAATCATTAGACGTCGACAATCCCGGGCTAAAGCTGTACTTGAGAATAAATTGATAAAACGGCGCAAGCCATATATGCATGAATCACGCCATCTACATGCAATGCGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACGAGAAATTCCACTGACGTAAATGGTAAAAGTGGAAGAGAAGTGAACAAAAACAGTGCCTCTCAGAGTTCTGAGGTTGGAACTATAAATTCATCAAAGGAGACAAATGGAAGCAGTCCAAATATCTCCGGTTCAGAGGTGACCAGCATGTATTCTCGAGGAGGTTTTGATAACTTTTCTGTCAATCATCTTGGATCTACCGTTCACTCACTAACAGGCATGATAGATAGTGGGCACGGTATCATCATGTCCACAAAATGGGGTGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA 933 0.4373 MAMQTVYLKEHEGVVHNSVGQLSSATSAPWWSAFGSQSVCGESCGQMKPFSLELPNYVDQLATGKQSARGVEQLLDRGHTTQFTIFPDDAQSPQATLSLQSSLAEPRNRFEHGFNQPMICAKYPYMDQFYGLISTYGPQISGRIMLPFNLTYDDGPTYVNAKQYHGIIRRRQSRAKAVLENKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSTDVNGKSGREVNKNSASQSSEVGTINSSKETNGSSPNISGSEVTSMYSRGGFDNFSVNHLGSTVHSLTGMIDSGHGIIMSTKWGAAGNCCNLKV* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0688 310 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 309 - -
Apr8g0688 310 SMART cbf3 152 213 IPR001289 GO:0003700|GO:0006355
Apr8g0688 310 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 156 210 IPR001289 GO:0003700|GO:0006355
Apr8g0688 310 Gene3D - 153 215 - -
Apr8g0688 310 MobiDBLite consensus disorder prediction 190 258 - -
Apr8g0688 310 PRINTS CCAAT-binding transcription factor subunit B signature 156 178 IPR001289 GO:0003700|GO:0006355
Apr8g0688 310 PRINTS CCAAT-binding transcription factor subunit B signature 187 210 IPR001289 GO:0003700|GO:0006355
Apr8g0688 310 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 309 IPR001289 GO:0003700|GO:0006355
Apr8g0688 310 MobiDBLite consensus disorder prediction 210 258 - -
Apr8g0688 310 ProSiteProfiles NF-YA/HAP2 family profile. 153 213 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0688 Apr-Chr8 6533574 6539460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0688 1 310 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.363 7.96e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr8g0688 CBFB_NFYA 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0688 K08064 - gmx:100808195 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0392 4 3347564 3352058 Apr8g0688 8 6533574 6539460 PCT