Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0687 ATGGCTGCTACAATTACTGCTTCTTCCCTTGTCTGCAACAGAATCTACAACCTCTCCTTCATCCATTCTTCCATTTCACTCGCACTTAACTTCCCACACACACCCATTTCCTTAAAACCCCACAATCTCATTCTCAACCTCCAATTTTTGAATCCTTATCCTCTTGCTCTTTCTTATCTTCCCTTACCCAGTGTTTCCTTCCACGCATTCCCAGACACCGAAGAAGAAGAAGACCCTCAACCCCAAACCTCCCAAAAACCAGACCCAAGGGTCTCACACTGCGGGAGGCTCTTTGTTGGGAACTTGCCTTATTCATTGCCTTCTTCCCAATTGGCTCATCTCTTTGCAAACGCTGGCAATGTTGTATCTGTCGAGATTGTGCATGATGACATTACGGGTAGGAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTGGAGGATGCTGAGCAAGCAATTCGAATGTTTGATGGCACTGAAGTTGGAGGTAGGATTATTAAGGTAAACTTCCCAGAAATACCCAAACGAGGCAAAAGGTTAGTAACGGGTTCAAACTATAAGGGATTTGTAGACAGCCCTTACAAGATCTATGCTGGAAACCTTGGTTGGGATCTGACATCACAGGGTCTTAGAGTTGCCTTTGCTAAGCAGCGAGGCTTCTTGAGTGCCAAGGTCATCTATGAAAGGAACAATGGAAAATCTCGGGGATACGGGTTTGTCTCTTTTGAAACTGCTGAGGATTTAGAGGCTGCTATGAATGCTATGAACGGTGTGGAGATTCAAGGCCGGCCCTTACAACTGAACTTAGCTGTAGATAAGAAGCCATCATCTTCTCCGGTAATTCATAAAAACACAGGAAGTAGTGTTGATAGCATGGAAATGCTGTTTGGTGTCAACACATAA 903 0.4485 MAATITASSLVCNRIYNLSFIHSSISLALNFPHTPISLKPHNLILNLQFLNPYPLALSYLPLPSVSFHAFPDTEEEEDPQPQTSQKPDPRVSHCGRLFVGNLPYSLPSSQLAHLFANAGNVVSVEIVHDDITGRSRGFAFVTMGSVEDAEQAIRMFDGTEVGGRIIKVNFPEIPKRGKRLVTGSNYKGFVDSPYKIYAGNLGWDLTSQGLRVAFAKQRGFLSAKVIYERNNGKSRGYGFVSFETAEDLEAAMNAMNGVEIQGRPLQLNLAVDKKPSSSPVIHKNTGSSVDSMEMLFGVNT* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0687 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 265 IPR000504 GO:0003723
Apr8g0687 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 167 IPR000504 GO:0003723
Apr8g0687 300 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 281 - -
Apr8g0687 300 CDD RRM_HP0827_like 96 172 - -
Apr8g0687 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Apr8g0687 300 PANTHER OS02G0815200 PROTEIN 1 281 - -
Apr8g0687 300 SMART rrm1_1 195 268 IPR000504 GO:0003723
Apr8g0687 300 SMART rrm1_1 96 169 IPR000504 GO:0003723
Apr8g0687 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Apr8g0687 300 SUPERFAMILY RNA-binding domain, RBD 77 176 IPR035979 GO:0003676
Apr8g0687 300 SUPERFAMILY RNA-binding domain, RBD 190 277 IPR035979 GO:0003676
Apr8g0687 300 MobiDBLite consensus disorder prediction 72 91 - -
Apr8g0687 300 Gene3D - 68 177 IPR012677 -
Apr8g0687 300 Gene3D - 178 285 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0687 Apr-Chr8 6528725 6530765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0687 97 274 Eukaryotic Initiation Factors Gene Family AT4G34110 27.869 1.30e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0687 - - gmx:100814852 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0391 4 3343622 3346069 Apr8g0687 8 6528725 6530765 PCT