Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0686 ATGAACGACTTGTTCTCCGGCTCCTTCTCCCGCTTCCGCAACAGCGATCAAGTCTCGCCGGATAACAGCAACAACCACCACGTGATCGAGATGACGGCGGCGGCAGAGGGCGGCGTGCAATTGAATAAGTTCTTCGAAGAAGTTGAGTGGGTGAAAGAGGAGTTGAAGGAACTGGAACGTCTCCATGAGAGCTTAAGTGAATCGCACGAGAAGAGCAAGACCCTTCACAGCGCAAAAGCCGTGAAGGAGCTTCGTTCACGCATGGACGCTGACGTGGCTTTGGCTCTTAAAAAAGCCAAGCTAATCAAGGTCCGGCTCGAGGCACTGGACCGGTCGAACGAGGCAAGCCGAAACATGCCTGGTTCGGGTCCCGGTTCGTACTCGGATCGGACCCGGACCTCCGTGGTGAGTGGTCAGAGGAAGAAGCTGAAAGCTACGATGGAGAGCTTCAACAGCCTGAGACAACAGATATCTTCGGAGTACAGGGAGACCGTACAACGTAGATACTACACCGTCACCGGAGAGAACCCTGATGAAAAAACCATTGACCTCCTCATCTCCACTGGCGAAAGTGAAACGTTTCTGCAGAAAGCGATCGAACAGCAAGGTAGAGCGAGCGTGATGGACACGATACAAGAGATTCAAGAGAGGCATGACACGGTAAAAGAAATAGAGAGAAACCTGAACGAGCTGCACCAGGTCTTCATGGACATGGCCGTTTTGGTGGAAACCCAGGGTGAACAATTGGACGACATTGAGAACCACGTGGCACGAGCCAATTCGTACGTGAGGGGTGGGGTCCAGCAGTTGCACGTTGCGAGGAAGCACCAGAAGAATACCCGAAAGTGGACCTGCATAGCCATCATACTGCTCATCATAATCATCTTGATCATTGTTCTCCCTATAGTCCTAAGAAATTAA 921 0.5179 MNDLFSGSFSRFRNSDQVSPDNSNNHHVIEMTAAAEGGVQLNKFFEEVEWVKEELKELERLHESLSESHEKSKTLHSAKAVKELRSRMDADVALALKKAKLIKVRLEALDRSNEASRNMPGSGPGSYSDRTRTSVVSGQRKKLKATMESFNSLRQQISSEYRETVQRRYYTVTGENPDEKTIDLLISTGESETFLQKAIEQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFMDMAVLVETQGEQLDDIENHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLIIIILIIVLPIVLRN* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0686 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 18 301 - -
Apr8g0686 306 SMART tSNARE_6 206 273 IPR000727 -
Apr8g0686 306 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Apr8g0686 306 Pfam SNARE domain 247 299 IPR000727 -
Apr8g0686 306 Gene3D - 39 171 - -
Apr8g0686 306 CDD SynN 41 198 IPR006011 GO:0016020
Apr8g0686 306 SMART SynN_4 36 162 IPR006011 GO:0016020
Apr8g0686 306 MobiDBLite consensus disorder prediction 115 134 - -
Apr8g0686 306 PANTHER SYNTAXIN 18 301 IPR045242 -
Apr8g0686 306 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Apr8g0686 306 Coils Coil 41 75 - -
Apr8g0686 306 CDD SNARE_syntaxin1-like 210 270 - -
Apr8g0686 306 Gene3D - 200 304 - -
Apr8g0686 306 MobiDBLite consensus disorder prediction 113 134 - -
Apr8g0686 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr8g0686 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0686 Apr-Chr8 6518083 6520617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0686 33 285 SNARE and Associated Proteins AT3G11820 73.518 8.11e-139 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0686 K08486 - gmx:100793347 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0389 4 3335255 3337310 Apr8g0686 8 6518083 6520617 PCT