Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0685 ATGAACGACTTGTTCTCCGGTTCGTTCTCTCGCTTCCGCAGCGACCAAGCCTCGCCGGATCCTCACCACGTGATCGAGATGACCGGCGGCGGCGGTGGAGTGAACCTCGACAAGTTCTTCGAGGATGTTGAGGGAGTGAAGGAGGAACTGAAAGAGGTTGATGAGCTAGCGCAGAATTTGAAGAGTAGCCACGAACAGAGCAAAACGGTGCACAACGCCAAGGCCGTTAGGGACCTTCGTTCGCGCATGGACGGCCACGTGTCCGTCGCTCTCAAGAACGCCAAACTTATTAAGCTCAAGTTGGAGGCTCTGGAGCGGTCCAACGCTGCGAACCGGAACCTCCCCGGTTGCGGACCCGGTTCGTCTTCGGACCGGACCCGAACCTCCTTGGTCAACGGTTTGAAAAAGAAGCTTAGGGACTCTATGGAGAGCTTCAACGAGATTCGCCAACTCATATCGACGGAGTACAGGGAGACCGTGCAACGCCGTTACTTCACCGTTACCGGCGAAAACCCCGATGATAAGACCCTTGATCTCTTAATCTCCACTGGTGAGAGTGAGACCTTCCTTCAGAAAGCGATTCAAGAACAGGGCAGGGGTAGAATTTTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTGAAAGAGATAGAGAAGAGTCTGAAGGAGTTGCACCAAGTGTTCCTTGACATGACAGTGTTAGTGCAAGCTCAAGGTGAGCAATTGGATGATATTGAGAGTCATGTGGCAAGGGCTCATTCATTTGTGCGCACCGGAGCTGAGCAGTTGCATACTGCGCGCAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATTATACTTCTTCTGGTGATCATCTTGTTTGTGGTGCTCTTCACTGTGAAGCCGTGGGAACATAATGGTAGTGGCAGTGGTCAGCCTGCACCGGCTCAAACACCTCCTTCTCCTCCTAATGCTTAA 972 0.5195 MNDLFSGSFSRFRSDQASPDPHHVIEMTGGGGGVNLDKFFEDVEGVKEELKEVDELAQNLKSSHEQSKTVHNAKAVRDLRSRMDGHVSVALKNAKLIKLKLEALERSNAANRNLPGCGPGSSSDRTRTSLVNGLKKKLRDSMESFNEIRQLISTEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKSLKELHQVFLDMTVLVQAQGEQLDDIESHVARAHSFVRTGAEQLHTARKHQKNTRKWTCYCIILLLVIILFVVLFTVKPWEHNGSGSGQPAPAQTPPSPPNA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0685 323 Pfam SNARE domain 242 294 IPR000727 -
Apr8g0685 323 SMART SynN_4 31 157 IPR006011 GO:0016020
Apr8g0685 323 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Apr8g0685 323 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020|GO:0016192
Apr8g0685 323 MobiDBLite consensus disorder prediction 1 20 - -
Apr8g0685 323 MobiDBLite consensus disorder prediction 1 15 - -
Apr8g0685 323 Gene3D - 202 299 - -
Apr8g0685 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Apr8g0685 323 Gene3D - 34 166 - -
Apr8g0685 323 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr8g0685 323 SMART tSNARE_6 201 268 IPR000727 -
Apr8g0685 323 CDD SynN 36 193 IPR006011 GO:0016020
Apr8g0685 323 CDD SNARE_syntaxin1-like 205 265 - -
Apr8g0685 323 PANTHER SYNTAXIN 8 305 IPR045242 -
Apr8g0685 323 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 8 305 - -
Apr8g0685 323 Coils Coil 43 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0685 Apr-Chr8 6511505 6513567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0685 29 323 SNARE and Associated Proteins AT3G11820 72.222 8.23e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0685 K08486 - gmx:100809258 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0685 8 6511505 6513567 Apr8g0685 8 6511505 6513567 ECH
Apr4g0388 4 3330122 3331747 Apr8g0685 8 6511505 6513567 PCT