Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0681 ATGGACGAGATCGATGTCCCTCCCTTCTTCCTCTGCCCCATATCGCTCGAAATCATGAAGGATCCCGTCACCGTCGCAACCGGTATCACCTACGACCGAGACAGCATCGAGAAATGGCTCTTCTCAACCAAAAACGACACGTGTCCCGTCACCAAGCAACCGCTTCTCCTCCCAGACCTCACTCCGAACCACACCCTCCGCAGACTCATCCAAGCCTGGTGCACCGTTAACGCCTCTAACGGCATCCAAAGAATCCCAACGCCAAAACCACCCGTCAGCAAATCAAATGTCGAAAAACTCCTCAAAGACGCTTCCAATTCCCCTCTCTTACAAACCCAATGCCTCCAATCCCTCAAATCCATCGCATCCCAAAGCGAATCAAACAAACGCTGCCTTGAATCCGCTGGCGCCGTTAACTTCTTAGCTTCACTCGTAACCGGCAACGCCGGTTCCTCTTCTCCTTCAACCTTAACAGATGACGATGATTTCGTGTTCAGAACAAGCGCAGAAGACGAAGCCTTAAGCATCTTACACACTCTTCACTTATCAGAAACAGGTTTGAAGACCCTAATGGGATTCAAAAGTGGCGAATTTTTAAACTCCTTAACAAGGTTAATGCAAAGAGGCGTATACGAGTCACGTGCTTACGCAGTTTTTTTGTTGAAATCAATGTCTGAAGTGGGTGACCCAGTTCAGTTAATTCACCTACGAAGTGAAATGTTCGTGGAATTAGTACAAGTTCTGAAGGACCAGATTTCACACAAGGCTTCGAAAGCGACGTTGCAAGCGTTGATTCAACTGTGTCCATGGGGAAGGAACAGGATCAAAGCGGTGGAAGCAGGTGCTGTTCCTGTATTGGTGGAGCTTCTTTTGGATTGCAAAGAGAGAAAGCCTTGTGAAATGATGCTTGTGCTTTTGGAGATTCTGTGTCAAAGTGCTGATGGGCGTGCAGGGTTGTTGAGCCATGCGGCGGGTTTGGCTATTGTGTCGAAGAAGATTCTGAGGGTTTCGACGATGGCGAATGATAGGGCTACGAGGATTTTGTTGTCTGTTTGTAGGTTTTCTGCGACTCCATGTTTGGTGCAAGAAATGCTGAACCTGGGTGTGGTGGCGAAGCTATGTTTGGTGCTTCAGGTGGATAGTGGGAACAAGGCGAAGGAGAAAGCGAAGGAGATTCTCAAGCTTCATGCGAGGGTTTGGAGGAATTCGCCTTGCTTACCCAGTCATTTCCTTGCTTCGTACCCAACGAGTGCGTGA 1257 0.4861 MDEIDVPPFFLCPISLEIMKDPVTVATGITYDRDSIEKWLFSTKNDTCPVTKQPLLLPDLTPNHTLRRLIQAWCTVNASNGIQRIPTPKPPVSKSNVEKLLKDASNSPLLQTQCLQSLKSIASQSESNKRCLESAGAVNFLASLVTGNAGSSSPSTLTDDDDFVFRTSAEDEALSILHTLHLSETGLKTLMGFKSGEFLNSLTRLMQRGVYESRAYAVFLLKSMSEVGDPVQLIHLRSEMFVELVQVLKDQISHKASKATLQALIQLCPWGRNRIKAVEAGAVPVLVELLLDCKERKPCEMMLVLLEILCQSADGRAGLLSHAAGLAIVSKKILRVSTMANDRATRILLSVCRFSATPCLVQEMLNLGVVAKLCLVLQVDSGNKAKEKAKEILKLHARVWRNSPCLPSHFLASYPTSA* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0681 418 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Apr8g0681 418 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Apr8g0681 418 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Apr8g0681 418 SUPERFAMILY RING/U-box 3 78 - -
Apr8g0681 418 Gene3D - 94 403 IPR011989 -
Apr8g0681 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 415 - -
Apr8g0681 418 SUPERFAMILY ARM repeat 99 382 IPR016024 -
Apr8g0681 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Apr8g0681 418 PANTHER WDSAM1 PROTEIN 1 415 IPR045185 GO:0061630
Apr8g0681 418 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0681 Apr-Chr8 6426646 6427911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0681 1 415 U-box Gene Family AT3G52450 57.143 5.97e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0681 - - gmx:100809123 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0681 8 6426646 6427911 Apr8g0681 8 6426646 6427911 ECH
Apr8g0681 8 6426646 6427911 Apr4g0385 4 3291388 3292995 PCT