Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0680 ATGGATGAAATTGAAGTTCCTCAATACTTCATCTGCCCCATATCACTCCAAATCATGAAGGATCCTGTTACAGCCATAACAGGTATCACATACGATCGTGATAGCATTGAGAAGTGGCTATTCTCCAACAAGAGCACAACAACATGCCCCGTTTCCAAACAACCCCTCCCAAGGGACTCTGACTTAACCCCTAACCATACCCTTCGCCGTTTGATCCAAGCTTGGTGCACTCAAAATGCTTCACTTGGCATTGATCGCATTCCAACACCTAAACCCCCACTTGACAAAACTCAAGTTCTTAAACTCCTCAAAGACCTCAAAGACCACAAAAATCTCATGCAATTGGAGTTTCTTGCTGCAGAGAACGAGAGGAACAAGAAGTGTTTGCTAGAGGCTGGTGTGCCAAAGGTCATGATCATGTTCATTGTGAATTGTTATAAAAAGGGTCAAATTGAAAAGGGTCTTGAGGAAGCTCTTAGTATATTGCAATTTGTTAAGATTCCCGCGGAGGAAGTGAGGGTGCTTCTAAAGGAAAATGATCAAGTATTGGATTCTCTAACATGGGTTTTAAGTTTAAGTTGTGATGAAATGGAGAAGTCTGTTGCTATGAAATCACACGCGGTTTTGATCCTCAAAACAATTATCTACAAGGGTGACCCTAGTCATCATCAAGTTCTTGAGAGACTCAATCCTGAGTTTTTTGAAAGAATCGTGAAGATTCTAAGACATGGGATTACCCAAAAAGCGGTTTGTGCTGCTCTTCATGTCTTGTTGAGTGCTTGTCCGTGGGGACGAAACAGGTTCATGATGGTGGAAGCAGGTTTGGTTTTTGAGCTCATTGAGATTGAAATGGGGGCACCAGAAAATAGAGTCACCGAGCTCACACTAGCTATACTGTTTCATCTATGTTCTAGTGCTAATGGGAGAGCCAAGTTTCTGAGCCATGGGGGTTCCATCGCTGTGGTGACAGAGAGAATATTGAAGGTTTCAGCAGCTGTTGATGATAGAGCTATATTTATTCTCTCTTTGATTTCTAAGTTTTCTGGCACAAACACGGTGCTTCAAGAGATGTTGAAGGTTGGAACTGTGTCGAAGCTTTGCACGTTGCTTCAAACTGATCATGCCAAGTATCTAAAGGACAAAGCAATGGAGATGCTCAAGTCTCACTGGGAGGTTTGGAAGAACTCTCCTTGTTTTCCTAATCTCTCTTTTTATGCAACAACCTTTCATAGGTGA 1236 0.4231 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEKWLFSNKSTTTCPVSKQPLPRDSDLTPNHTLRRLIQAWCTQNASLGIDRIPTPKPPLDKTQVLKLLKDLKDHKNLMQLEFLAAENERNKKCLLEAGVPKVMIMFIVNCYKKGQIEKGLEEALSILQFVKIPAEEVRVLLKENDQVLDSLTWVLSLSCDEMEKSVAMKSHAVLILKTIIYKGDPSHHQVLERLNPEFFERIVKILRHGITQKAVCAALHVLLSACPWGRNRFMMVEAGLVFELIEIEMGAPENRVTELTLAILFHLCSSANGRAKFLSHGGSIAVVTERILKVSAAVDDRAIFILSLISKFSGTNTVLQEMLKVGTVSKLCTLLQTDHAKYLKDKAMEMLKSHWEVWKNSPCFPNLSFYATTFHR* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0680 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 403 - -
Apr8g0680 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Apr8g0680 411 CDD RING-Ubox_PUB 10 54 IPR045210 -
Apr8g0680 411 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Apr8g0680 411 SUPERFAMILY ARM repeat 115 376 IPR016024 -
Apr8g0680 411 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Apr8g0680 411 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
Apr8g0680 411 SUPERFAMILY RING/U-box 3 84 - -
Apr8g0680 411 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Apr8g0680 411 Gene3D - 98 396 IPR011989 -
Apr8g0680 411 Coils Coil 103 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0680 Apr-Chr8 6391647 6392882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0680 2 399 U-box Gene Family AT3G11840 42.825 3.58e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0680 - - gmx:100798446 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0680 8 6391647 6392882 Apr8g0680 8 6391647 6392882 ECH
Apr4g0385 4 3291388 3292995 Apr8g0680 8 6391647 6392882 PCT