Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0679 ATGGCGACATACTTTCATAGTAACTCCGAAATCCAAGGTGGTGCTGACGGCCTTCAAACTCTTGTACTAATGAATCCTGGCTATGTTCAATACTCAGACACGTCGACGCCATCTCACGGTGGAAACCTCGTATTCCTCAACTCCGCCGGCGGCGGCGGCGGCAACAGCTCCCTTTCCCCACAAAATCTCCCCCACGCGCCGCCCCCTCACACTCAACAATTCGTCGGCGTGCCACTCTCCGCTGCGGCAGCCTCCTTGCAGGAGCCGCCGTCCATGCACCACGAAGTCTCCGCCTTGCATGGGTTCCTGCCCCGCATGCAGTACAATCTCTGGAACGCAATTGACCCCAACGCGGCGGCGCGTGAGGCCTCACGCGCCACCCAAGGGCTTTCGTTGAGCCTGCAGGCTCAGGCAGGCGATGACATGCGCGTGTCAGGCGGGTCGTCGTCCTCGGCTTCGGGGGTTACCAACGGTGGCGGAGTGTCGGGGATTCAGAGCGTGCTGTTGAGTTCAAAGTATTTGAAGGCCACGCAGGAGCTTCTAGACGAGGTTGTGAATGTTAATGGCGGAATTAAGGTTGAACAGGCAAAGAAAAGCTTCGACAAGACTAAGGTGGTTGGGGAATCATCAACTGCAGCTAGTGGTGATGGTTCAGTCGTCGCGGAGGGAAGTGGGAAGCGTAGCTCTGAATTGTCAACTACGGAGAGACAAGAAATTCAGATGAAGAAGGCAAAACTAATCAGCATGCTTGATGAGGTGGAGCAAAGATACAGGCAGTACCACAACCAGATGCAGATAGTGATATCCTCTTTTGAGCAAGCTGCAGGGATTGGGTCAGCAAGAACTTACACAGCCCTTGCATTGCAAACAATCTCAAAGCAGTTTCGGTGCTTGAAAGATGCAATAACAGGGCAAATAAGAGCTGCAAATAAGAGCTTAGGAGAAGAGGATTGTTTTGGAGGTAAAATTGAAGGTTCAAGGCTCAAGTATGTTGACCATCATCTTAGGCAACAAAGAGCTATCCAACAATTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTACCCCAAGGACTCCGACAAACACATGCTTGCAAAACAAACAGGGCTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTAGAGTTAGGCTTTGGAAGCCAATGGTGGAGGAAATGTACATGGAAGAGATGAAGGAGCATGAAGTGAATGGATCAGAGGACAAATCAAGCAAGAGTAGTGAAGATCCCGCTATGAAAACAACTCCACAAGAGAGGGGTCCTACCTCTGAAATTGAATCTAAAAGTTTCAATTCCAAACAAGATGTTTCAAAAAATCAAAACACTCCAATAATTTCAGCTTCTCCACCATCAACTTCACCTGTTGGGGGTAATGTTAGAAACCAATCCGCATTCAGCTTCATTGGGTCATCAGAACTTGATGGAATCACACAAGGAAGTCCTAAGAAACCAAGGAACCATGAAATTCTACACTCTCCAAACCGTGTCCCTTCAATTAACATGGATGTCAAAGTCAATGAAGCAAACAATGAACAACTCTCAATGGATGGTAGGCAAAACAGAGATGGGTATTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGTCAATACCCAATGGAGGAAATTGGTAGGTTTGATGCAGAACAATTCACACCAAGGTTTTCAGGTAATGGTGTTTCCCTTACTCTTGGTCTTCCTCATTGTGAAACGTTGTCAGGTACCCATCAAACATTTCTTCCAAGCCAAAATATCCAACTAGGAAGAGGATTGGACATTGGTGAACCAAACCAGTTTGGTGCCTTAAACAATTCCAATTCTCACTCTTCAACAGCATTTGAGAGTATCAACATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCGGACTTTGTGGCCTAA 2004 0.4741 MATYFHSNSEIQGGADGLQTLVLMNPGYVQYSDTSTPSHGGNLVFLNSAGGGGGNSSLSPQNLPHAPPPHTQQFVGVPLSAAAASLQEPPSMHHEVSALHGFLPRMQYNLWNAIDPNAAAREASRATQGLSLSLQAQAGDDMRVSGGSSSSASGVTNGGGVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVEQAKKSFDKTKVVGESSTAASGDGSVVAEGSGKRSSELSTTERQEIQMKKAKLISMLDEVEQRYRQYHNQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEHEVNGSEDKSSKSSEDPAMKTTPQERGPTSEIESKSFNSKQDVSKNQNTPIISASPPSTSPVGGNVRNQSAFSFIGSSELDGITQGSPKKPRNHEILHSPNRVPSINMDVKVNEANNEQLSMDGRQNRDGYSFMGNQTNFIGGFGQYPMEEIGRFDAEQFTPRFSGNGVSLTLGLPHCETLSGTHQTFLPSQNIQLGRGLDIGEPNQFGALNNSNSHSSTAFESINMQNPKRFAAQLLPDFVA* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0679 667 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 626 - -
Apr8g0679 667 CDD homeodomain 352 412 IPR001356 GO:0003677
Apr8g0679 667 MobiDBLite consensus disorder prediction 206 235 - -
Apr8g0679 667 MobiDBLite consensus disorder prediction 423 524 - -
Apr8g0679 667 SMART HOX_1 352 416 IPR001356 GO:0003677
Apr8g0679 667 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 10 626 - -
Apr8g0679 667 Pfam Homeobox KN domain 369 408 IPR008422 GO:0003677|GO:0006355
Apr8g0679 667 SMART prehox3 162 304 IPR006563 -
Apr8g0679 667 ProSiteProfiles 'Homeobox' domain profile. 349 412 IPR001356 GO:0003677
Apr8g0679 667 MobiDBLite consensus disorder prediction 423 439 - -
Apr8g0679 667 Pfam Associated with HOX 167 303 IPR006563 -
Apr8g0679 667 MobiDBLite consensus disorder prediction 440 508 - -
Apr8g0679 667 Coils Coil 236 263 - -
Apr8g0679 667 Gene3D - 355 434 - -
Apr8g0679 667 SUPERFAMILY Homeodomain-like 353 419 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0679 Apr-Chr8 6378068 6383186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0679 1 667 Homeobox Transcription Factor Family AT2G35940 49.079 4.12e-179 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr8g0679 POX 2.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0679 - - gmx:100810851 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0679 8 6378068 6383186 Apr8g0679 8 6378068 6383186 ECH
Apr4g0382 4 3266766 3271492 Apr8g0679 8 6378068 6383186 PCT